Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq330 125 2e-23 seq301 104 6e-17 seq61 87.8 4e-12 seq246 84.2 5e-11 >seq330 Length=39978 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||||| Sbjct 15484 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15543 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || ||||| ||||||||||| || | || Sbjct 15544 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 15603 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || | ||||| || || || | |||| || || || Sbjct 15604 ATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 15663 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 15664 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | || | ||||| || || ||||| || |||||| Sbjct 14739 TGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCG 14798 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||||| |||||||| | || || || || ||||||| ||||| || | Sbjct 14799 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 14858 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || | || ||||| || || | ||| ||||| Sbjct 14859 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCC 14918 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||||||||||||||| |||||||| Sbjct 14919 ACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| || || ||||| || ||||||| | Sbjct 15198 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 15257 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||||||||| ||||| || | ||| Sbjct 15258 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 15317 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | ||| || || || Sbjct 15318 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACC 15377 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466 ||||| ||||| ||||| || || || |||||||||| || Sbjct 15378 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGACTA 15417 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||||| || || ||||| || |||||| Sbjct 14970 CCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 15029 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || | || || || || ||||| |||||||| ||| || ||| Sbjct 15030 AAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGA---TCCGGG 15086 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || | ||| || || || || | || ||||| Sbjct 15087 GGAATACCCTCCTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCA 15146 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 15147 ACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196 >seq301 Length=43884 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || || || || || | || || || |||||| Sbjct 7544 TCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 7603 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || || ||| || || || || |||||||| || | || || Sbjct 7604 ATCAATCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 7660 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || |||||||||||||| || || |||||| Sbjct 7661 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 7720 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 7721 ACGAAAATCTGCAT 7734 >seq61 Length=119690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 288272 GAATCGTGCTTTCTTTTT--GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 |||||||| |||| || |||| || |||||| | ||| | | |||||| | || Sbjct 2961 GAATCGTGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTG 2902 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT 288386 || || ||| |||||| ||||| || || ||| || || ||||| ||||| || Sbjct 2901 CTTACCAGCGTAGATCAAGCGCTGCTGG---TCAGGGCGAATGCCCTCTTTGTCCTGAAT 2845 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || | || ||||| || || | ||| ||||| || | ||| ||||| ||||| || Sbjct 2844 CTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCC 2785 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | ||||||||||| ||||| || Sbjct 2784 GGTGAAGGTCTTGACGAAAATCTGTAT 2758 >seq246 Length=51316 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 || ||| |||| || | || | || ||||| || | || ||||| || || || || Sbjct 23147 GAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAG 23088 Query 269191 TTCGTGGCTGATCGTAT-CTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAA 269249 || || || |||||| | ||| || | || || | ||||| | ||||| || || Sbjct 23087 TTTGTTGCCGATCGTCTGCTTGTCG-CTCTAGGCAACGAGAAGATCTACAAGTCTGCCAA 23029 Query 269250 TCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCG 269309 ||||| | ||| ||||| ||||| |||| || ||||| ||||||||||| ||||| Sbjct 23028 CCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCG 22969 Query 269310 TGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342 ||| |||||| || ||||||| ||||| Sbjct 22968 CGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 22936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179630640285816