Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq330 125 2e-23
seq301 104 6e-17
seq61 87.8 4e-12
seq246 84.2 5e-11
>seq330
Length=39978
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || |||||||
Sbjct 15484 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15543
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | ||| || || ||||| ||||||||||| || | ||
Sbjct 15544 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 15603
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| ||||||||||| || | ||||| || || || | |||| || || ||
Sbjct 15604 ATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 15663
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 15664 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || | || | ||||| || || ||||| || ||||||
Sbjct 14739 TGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCG 14798
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||||| |||||||| | || || || || ||||||| ||||| || |
Sbjct 14799 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 14858
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || || ||||| || || | || ||||| || || | ||| |||||
Sbjct 14859 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCC 14918
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 14919 ACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || || || | ||| || || ||||| || ||||||| |
Sbjct 15198 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 15257
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || ||||||||||| ||||| || | |||
Sbjct 15258 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 15317
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | ||| || || ||
Sbjct 15318 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACC 15377
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATA 288466
||||| ||||| ||||| || || || |||||||||| ||
Sbjct 15378 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGACTA 15417
Score = 109 bits (120), Expect = 1e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || |||| ||||| || || ||||| || ||||||
Sbjct 14970 CCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 15029
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| ||||| || | || || || || ||||| |||||||| ||| || |||
Sbjct 15030 AAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGA---TCCGGG 15086
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||| || || | ||| || || || || | || |||||
Sbjct 15087 GGAATACCCTCCTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCA 15146
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| ||||| ||||||| ||||||||||| ||||||||
Sbjct 15147 ACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196
>seq301
Length=43884
Score = 104 bits (114), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| || || || || || | || || || ||||||
Sbjct 7544 TCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 7603
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| ||||| || || ||| || || || || |||||||| || | || ||
Sbjct 7604 ATCAATCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 7660
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | ||| || || || || || |||||||||||||| || || ||||||
Sbjct 7661 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 7720
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 7721 ACGAAAATCTGCAT 7734
>seq61
Length=119690
Score = 87.8 bits (96), Expect = 4e-12
Identities = 145/207 (70%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 288272 GAATCGTGCTTTCTTTTT--GGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329
|||||||| |||| || |||| || |||||| | ||| | | |||||| | ||
Sbjct 2961 GAATCGTGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTG 2902
Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT 288386
|| || ||| |||||| ||||| || || ||| || || ||||| ||||| ||
Sbjct 2901 CTTACCAGCGTAGATCAAGCGCTGCTGG---TCAGGGCGAATGCCCTCTTTGTCCTGAAT 2845
Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446
|| | || ||||| || || | ||| ||||| || | ||| ||||| ||||| ||
Sbjct 2844 CTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCC 2785
Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473
||| | ||||||||||| ||||| ||
Sbjct 2784 GGTGAAGGTCTTGACGAAAATCTGTAT 2758
>seq246
Length=51316
Score = 84.2 bits (92), Expect = 5e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190
|| ||| |||| || | || | || ||||| || | || ||||| || || || ||
Sbjct 23147 GAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAG 23088
Query 269191 TTCGTGGCTGATCGTAT-CTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAA 269249
|| || || |||||| | ||| || | || || | ||||| | ||||| || ||
Sbjct 23087 TTTGTTGCCGATCGTCTGCTTGTCG-CTCTAGGCAACGAGAAGATCTACAAGTCTGCCAA 23029
Query 269250 TCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCG 269309
||||| | ||| ||||| ||||| |||| || ||||| ||||||||||| |||||
Sbjct 23028 CCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCG 22969
Query 269310 TGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342
||| |||||| || ||||||| |||||
Sbjct 22968 CGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 22936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179630640285816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |