Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq246 100 6e-16
>seq246
Length=51316
Score = 100 bits (110), Expect = 6e-16
Identities = 266/404 (66%), Gaps = 2/404 (0%)
Strand=Plus/Minus
Query 243353 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 243412
||||||| ||||| ||| |||| | |||||||| || | || |||||| |||
Sbjct 23338 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCA 23279
Query 243413 TCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGA 243472
|| ||| |||||||| || ||| | || | || || | || | ||| |||
Sbjct 23278 TCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGA 23219
Query 243473 ACAA-GCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAG 243531
|| |||| || || | || | |||||||| || || || || || ||
Sbjct 23218 ACCGTGCTAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAG 23160
Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591
|| ||| | ||| ||| | || ||| || ||||||||||||| | || |||
Sbjct 23159 GAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAG 23100
Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651
|||||||| || || || ||||| || | | |||| || || | ||||| | |||
Sbjct 23099 CAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTAC 23040
Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711
|| || |||||||||| ||| |||||| |||||| || || || || ||||||
Sbjct 23039 AAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTC 22980
Query 243712 TTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATGAA 243755
||||| ||||| ||| || || || ||||||| |||||
Sbjct 22979 TTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 22936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102857786618200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |