Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq246 100 6e-16 >seq246 Length=51316 Score = 100 bits (110), Expect = 6e-16 Identities = 266/404 (66%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 243353 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 243412 ||||||| ||||| ||| |||| | |||||||| || | || |||||| ||| Sbjct 23338 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCA 23279 Query 243413 TCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGA 243472 || ||| |||||||| || ||| | || | || || | || | ||| ||| Sbjct 23278 TCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGA 23219 Query 243473 ACAA-GCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAG 243531 || |||| || || | || | |||||||| || || || || || || Sbjct 23218 ACCGTGCTAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAG 23160 Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||| | ||| ||| | || ||| || ||||||||||||| | || ||| Sbjct 23159 GAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAG 23100 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 |||||||| || || || ||||| || | | |||| || || | ||||| | ||| Sbjct 23099 CAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTAC 23040 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 || || |||||||||| ||| |||||| |||||| || || || || |||||| Sbjct 23039 AAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTC 22980 Query 243712 TTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTGATGAA 243755 ||||| ||||| ||| || || || ||||||| ||||| Sbjct 22979 TTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 22936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102857786618200