Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq236 237 2e-57
seq246 127 2e-24
>seq236
Length=53426
Score = 237 bits (262), Expect = 2e-57
Identities = 1134/1779 (64%), Gaps = 49/1779 (3%)
Strand=Plus/Minus
Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624
||||||| || || ||| ||||| | || ||||||||||| || |||||||| |
Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874
Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684
| |||||||| || | ||||| || | |||| | ||| ||| | ||||
Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 6814
Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744
|| ||||| ||||| ||||| ||||| |||||||| |||||||| | | ||
Sbjct 6813 GGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CA 6755
Query 113745 CATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 113800
|| || ||| | ||||| || || |||| || ||| ||||| || |||
Sbjct 6754 -AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGG 6698
Query 113801 ATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 113860
|| | || || || |||||||| | | | || | | |||||| | |
Sbjct 6697 ATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCG 6638
Query 113861 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAAC 113917
|||||||| ||| | | || |||| |||| || |||||||| |||
Sbjct 6637 GACCAGAGGCCAGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAACCTGGAAC 6581
Query 113918 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 113977
|| || || ||| |||| | | ||||| |||| ||||| ||||| |||||||| |||
Sbjct 6580 TCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTG 6521
Query 113978 TTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 114037
||||||| || |||| || ||| || ||||| || || | ||| | |||||| ||
Sbjct 6520 TTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGC 6461
Query 114038 AGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTT-GAGC-TTTG 114092
||| | ||| | || | |||||||| | |||||| || | || ||| ||||
Sbjct 6460 GTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTG 6401
Query 114093 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATG 114152
| ||| |||| || || |||||||| || | ||| || || ||||||| ||||
Sbjct 6400 ACATCCC-----ACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATG 6346
Query 114153 TCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 114212
||||| || ||||| |||| || | || ||||| ||||| || || || |
Sbjct 6345 ATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGA 6286
Query 114213 TTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 114271
| |||||||| || | |||| || | | ||||| || ||||| | | ||
Sbjct 6285 TGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCATGCGC 6227
Query 114272 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 114331
|| || | || || ||||| |||||||| | |||||| || || || | ||||
Sbjct 6226 AGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATA 6167
Query 114332 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 114391
|| || || || || || || || || ||| || | | | || || ||
Sbjct 6166 TTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTG 6107
Query 114392 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 114451
| || ||||| |||| |||||||||||| | | ||| | | || | | |
Sbjct 6106 CGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAA 6047
Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511
| |||||| ||| ||||| | || |||| || || |||| |||||| | ||
Sbjct 6046 TCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCA 5987
Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571
|||||| ||||| || || || | || || || ||||| |||| |||||| ||
Sbjct 5986 CAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGG 5927
Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631
|| ||| ||| || ||||||||||| |||||| | || | || ||||| || |||
Sbjct 5926 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 5867
Query 114632 GACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 114690
| | || || | | ||| | | || | | | | | ||| | | || |||||
Sbjct 5866 GCTTCCAGGATGGAATACCACAGCTTCTGAG-CGCGAATAGTCTTGCGACCACGTCCCTC 5808
Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750
| |||||| || || | || || ||||| || || | || | || || ||
Sbjct 5807 CCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGG 5748
Query 114751 TGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTC--CTCAACACGCTTCATGAA 114807
|| || |||| || | ||| | ||| | ||| || ||||||||||||||||||
Sbjct 5747 -GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGCTTCATGAA 5691
Query 114808 GAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 114867
||| || || ||||||||||| ||| | || ||| ||| | ||||| | || ||
Sbjct 5690 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5631
Query 114868 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 114927
|| || | || | || || | || || |||||||| || || ||||| | ||
Sbjct 5630 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGC 5571
Query 114928 GATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAA 114981
| | || | |||| |||| |||||| ||||| || || ||| || ||
Sbjct 5570 AAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAA 5514
Query 114982 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT 115041
|| |||||||| ||||| ||||| | ||| || || || || ||| |||
Sbjct 5513 GACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 5454
Query 115042 ATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 115101
|||| | || ||||| || || || ||||| || ||| ||| || || ||
Sbjct 5453 GGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGC 5394
Query 115102 GCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAA 115161
|| | | ||| || | ||||| || ||||| || |||| | ||| | |||
Sbjct 5393 ACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAA 5334
Query 115162 GCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 115220
||| |||| || ||| | || ||||| |||||||| ||||| || | || ||
Sbjct 5333 GCATGAGGACAGCTG-GGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAG 5275
Query 115221 TGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278
||| | | |||| ||||| | ||| ||||||| ||| |||||| || ||
Sbjct 5274 TGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCC 5217
Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317
|| || | || || ||||||| ||||| |||||
Sbjct 5216 CCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178
>seq246
Length=51316
Score = 127 bits (140), Expect = 2e-24
Identities = 348/525 (66%), Gaps = 15/525 (3%)
Strand=Plus/Plus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| |||||||||||||| |||||||| || || || ||| ||| ||
Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
||||||||||| |||||||| | |||||| || | ||| | ||| |||||||||
Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222
||||| || || || |||| || |||| |||||||| || || ||||
Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA---AGAGTTCTTGTCCTG 23420
Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282
| |||||| || ||||| | ||||| || || || || | ||||| || || |
Sbjct 23421 GATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 23480
Query 126283 AAAGA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 126340
|||| || || | | ||| | || |||||||| | || ||||| || ||
Sbjct 23481 GAAGAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 23538
Query 126341 GTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 126399
|| ||| ||||| | | ||| || | ||| | ||||||| | || || |||
Sbjct 23539 GTCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGG 23597
Query 126400 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 126459
||||| ||||| || || | | ||||| ||||| ||||| || |
Sbjct 23598 GATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGC 23657
Query 126460 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTT 126516
||||| || |||||||| | ||||| | || || | || |||| || | ||
Sbjct 23658 GGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATT 23717
Query 126517 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561
||| |||| |||||||| || ||||| | ||| || || |||||
Sbjct 23718 CCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597341862001760
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