Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq236 237 2e-57 seq246 127 2e-24 >seq236 Length=53426 Score = 237 bits (262), Expect = 2e-57 Identities = 1134/1779 (64%), Gaps = 49/1779 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| || || ||| ||||| | || ||||||||||| || |||||||| | Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 | |||||||| || | ||||| || | |||| | ||| ||| | |||| Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 6814 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || ||||| ||||| ||||| ||||| |||||||| |||||||| | | || Sbjct 6813 GGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CA 6755 Query 113745 CATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 113800 || || ||| | ||||| || || |||| || ||| ||||| || ||| Sbjct 6754 -AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGG 6698 Query 113801 ATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 113860 || | || || || |||||||| | | | || | | |||||| | | Sbjct 6697 ATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCG 6638 Query 113861 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAAC 113917 |||||||| ||| | | || |||| |||| || |||||||| ||| Sbjct 6637 GACCAGAGGCCAGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAACCTGGAAC 6581 Query 113918 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 113977 || || || ||| |||| | | ||||| |||| ||||| ||||| |||||||| ||| Sbjct 6580 TCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTG 6521 Query 113978 TTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 114037 ||||||| || |||| || ||| || ||||| || || | ||| | |||||| || Sbjct 6520 TTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGC 6461 Query 114038 AGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTT-GAGC-TTTG 114092 ||| | ||| | || | |||||||| | |||||| || | || ||| |||| Sbjct 6460 GTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTG 6401 Query 114093 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATG 114152 | ||| |||| || || |||||||| || | ||| || || ||||||| |||| Sbjct 6400 ACATCCC-----ACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATG 6346 Query 114153 TCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 114212 ||||| || ||||| |||| || | || ||||| ||||| || || || | Sbjct 6345 ATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGA 6286 Query 114213 TTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 114271 | |||||||| || | |||| || | | ||||| || ||||| | | || Sbjct 6285 TGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCATGCGC 6227 Query 114272 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 114331 || || | || || ||||| |||||||| | |||||| || || || | |||| Sbjct 6226 AGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATA 6167 Query 114332 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 114391 || || || || || || || || || ||| || | | | || || || Sbjct 6166 TTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTG 6107 Query 114392 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 114451 | || ||||| |||| |||||||||||| | | ||| | | || | | | Sbjct 6106 CGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAA 6047 Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 | |||||| ||| ||||| | || |||| || || |||| |||||| | || Sbjct 6046 TCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCA 5987 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 |||||| ||||| || || || | || || || ||||| |||| |||||| || Sbjct 5986 CAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGG 5927 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||| ||| || ||||||||||| |||||| | || | || ||||| || ||| Sbjct 5926 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 5867 Query 114632 GACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 114690 | | || || | | ||| | | || | | | | | ||| | | || ||||| Sbjct 5866 GCTTCCAGGATGGAATACCACAGCTTCTGAG-CGCGAATAGTCTTGCGACCACGTCCCTC 5808 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 | |||||| || || | || || ||||| || || | || | || || || Sbjct 5807 CCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGG 5748 Query 114751 TGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTC--CTCAACACGCTTCATGAA 114807 || || |||| || | ||| | ||| | ||| || |||||||||||||||||| Sbjct 5747 -GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGCTTCATGAA 5691 Query 114808 GAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 114867 ||| || || ||||||||||| ||| | || ||| ||| | ||||| | || || Sbjct 5690 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5631 Query 114868 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 114927 || || | || | || || | || || |||||||| || || ||||| | || Sbjct 5630 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGC 5571 Query 114928 GATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAA 114981 | | || | |||| |||| |||||| ||||| || || ||| || || Sbjct 5570 AAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAA 5514 Query 114982 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT 115041 || |||||||| ||||| ||||| | ||| || || || || ||| ||| Sbjct 5513 GACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 5454 Query 115042 ATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 115101 |||| | || ||||| || || || ||||| || ||| ||| || || || Sbjct 5453 GGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGC 5394 Query 115102 GCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAA 115161 || | | ||| || | ||||| || ||||| || |||| | ||| | ||| Sbjct 5393 ACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAA 5334 Query 115162 GCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 115220 ||| |||| || ||| | || ||||| |||||||| ||||| || | || || Sbjct 5333 GCATGAGGACAGCTG-GGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAG 5275 Query 115221 TGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 115278 ||| | | |||| ||||| | ||| ||||||| ||| |||||| || || Sbjct 5274 TGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCC 5217 Query 115279 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 || || | || || ||||||| ||||| ||||| Sbjct 5216 CCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178 >seq246 Length=51316 Score = 127 bits (140), Expect = 2e-24 Identities = 348/525 (66%), Gaps = 15/525 (3%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| || | ||| | ||| ||||||||| Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC--- 126222 ||||| || || || |||| || |||| |||||||| || || |||| Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA---AGAGTTCTTGTCCTG 23420 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | |||||| || ||||| | ||||| || || || || | ||||| || || | Sbjct 23421 GATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 23480 Query 126283 AAAGA-GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 126340 |||| || || | | ||| | || |||||||| | || ||||| || || Sbjct 23481 GAAGAGGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 23538 Query 126341 GTTTCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCT 126399 || ||| ||||| | | ||| || | ||| | ||||||| | || || ||| Sbjct 23539 GTCTCGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGG 23597 Query 126400 TATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCC 126459 ||||| ||||| || || | | ||||| ||||| ||||| || | Sbjct 23598 GATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGC 23657 Query 126460 AGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTT 126516 ||||| || |||||||| | ||||| | || || | || |||| || | || Sbjct 23658 GGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATT 23717 Query 126517 CCAGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 ||| |||| |||||||| || ||||| | ||| || || ||||| Sbjct 23718 CCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597341862001760