Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq236 273 2e-68 >seq236 Length=53426 Score = 273 bits (302), Expect = 2e-68 Identities = 1082/1676 (65%), Gaps = 46/1676 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||||||||| || ||||| || ||| | |||||| Sbjct 5103 AACTACCAATACTTCGGCTTCAAGACTCTGGAGCGTTCATACCTTCTGAAGCTTGATGGC 5162 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| || || || || | ||||| || | | || || || || Sbjct 5163 AAGATTGTTGAGCGGCCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGAC 5222 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893 ||||| | ||| || | | | || |||| |||| | || |||| | Sbjct 5223 GACATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACTCATG-C 5281 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || |||||||||||||| || |||||| | ||| |||| || || ||| || | Sbjct 5282 CTCTCCCACCCTGTTCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGT 5341 Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012 ||| | |||| ||| |||| || || | |||| || ||| ||||| | | Sbjct 5342 CGAC-ATGAAGGACGATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGA 5400 Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072 | || || || || || ||||| | | ||||| | | ||||||| || || | Sbjct 5401 TTTCCAAGATGGCTGGTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTT 5460 Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132 |||| || ||||| || ||||| ||||| | | || ||||| || |||||||||| Sbjct 5461 ACATTGCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACA 5520 Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192 || | || | || || |||||||||||| | | | ||| | || || |||| | Sbjct 5521 ACACTGCCAGATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACC 5580 Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252 ||||||| |||||||| ||||| | ||| | || || || |||||||||||||| | Sbjct 5581 TCGAGCCTTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGG 5640 Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 | || | || | ||| | ||| ||||||||| | || || || || ||||| | Sbjct 5641 AAGAGGTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGC 5700 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | || ||||| |||| | ||||| || | || ||||| ||||| || || ||| | | Sbjct 5701 GTGTTGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTGGCTG 5760 Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431 || | ||| | || || | ||||||| ||||| | |||| | || | Sbjct 5761 ACTGCTATGGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTGGTC 5820 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| ||| ||| |||||||||| || ||| |||| | ||| ||||| Sbjct 5821 -GCAAGACTATTCGCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACT 5879 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 |||| |||| ||| | | |||||| | |||| |||| ||||||| || |||| Sbjct 5880 GGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTG 5939 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || || |||||||||||| ||||||| | |||| || ||| Sbjct 5940 GGAACCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAG 5999 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 ||||||| || ||| ||| ||| | ||| | ||| || ||| |||| Sbjct 6000 GTTGCTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGT-CGA-----TTACA-- 6051 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGGATGGTCTTGAA 94730 | | ||| | | || | || ||||| |||| | | | || | ||| || Sbjct 6052 ACGAAGGCTGC-TATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGG-TTGTCCGCAA 6109 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790 ||| |||| | | || || ||| |||||| |||| |||||| ||| || | Sbjct 6110 CCTCAACAAGATCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATAT 6169 Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850 | || || ||||| ||| | || ||||||||| | || ||||| | | |||| Sbjct 6170 GCGCCACCGACCCATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTGCG 6229 Query 94851 TCTGCCCTACGACTCTGTCGA--CGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 |||||| || ||| ||| | || | | |||| | | || || || | ||| Sbjct 6230 CATGCCCTTTGAGTCTCCCGAGGCTCGTCAG--CTGAACAAGCAGATCTTTGAGACCATC 6287 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 || | | |||| | | || | | | |||| || | || || ||||| Sbjct 6288 TACCATGCGGCCCTTGAGGCTTCTATGGAGATCGCCA---AGGTGGAGGGTCCCTACGAA 6344 Query 94969 TCGTTCCGCGGATCGCCCTTGGAAC--AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 || ||| ||||| || || | | ||||||| | || |||||| | |||| ||| | Sbjct 6345 TCATTCAAGGGATCACC--TGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCA 6402 Query 95027 AGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084 | ||||| | |||| || ||||| |||| | | || || | | | |||||| Sbjct 6403 AACCCTCTGACCTGTGGGAGTGGGACTCGCTCAAGGAGCAGA--TCAAGGAGCACGGTAC 6460 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| |||| | ||||| ||||| || ||| ||| | ||||| || || || Sbjct 6461 GCGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAA 6520 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| ||||| |||| ||| |||||| | ||| | | || || || ||||| || Sbjct 6521 CAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGA 6580 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGG-GTGT-GTGGGG 95261 |||| || ||||| || || |||||| | || | |||| | | || | Sbjct 6581 GTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGTCCGA 6640 Query 95262 TGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 || || | ||||||| | |||| | ||||||||| | |||||||| || Sbjct 6641 TGCCA---TGAAGAACCGTATCATTGCT----GAGAACGGCTCCATTCAGAACATTCCCA 6693 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || || || |||||||| || ||||||||||| |||||||| | |||||| Sbjct 6694 ACATCCCCGAAGATATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGC 6749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713478689120