Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq236 273 2e-68
>seq236
Length=53426
Score = 273 bits (302), Expect = 2e-68
Identities = 1082/1676 (65%), Gaps = 46/1676 (3%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||| ||||||||| || ||||| || ||| | ||||||
Sbjct 5103 AACTACCAATACTTCGGCTTCAAGACTCTGGAGCGTTCATACCTTCTGAAGCTTGATGGC 5162
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| || || || || | ||||| || | | || || || ||
Sbjct 5163 AAGATTGTTGAGCGGCCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGAC 5222
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGC 93893
||||| | ||| || | | | || |||| |||| | || |||| |
Sbjct 5223 GACATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAGTTCTTCACTCATG-C 5281
Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953
| | || |||||||||||||| || |||||| | ||| |||| || || ||| || |
Sbjct 5282 CTCTCCCACCCTGTTCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGT 5341
Query 93954 -GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCA 94012
||| | |||| ||| |||| || || | |||| || ||| ||||| | |
Sbjct 5342 CGAC-ATGAAGGACGATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGA 5400
Query 94013 TCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCT 94072
| || || || || || ||||| | | ||||| | | ||||||| || || |
Sbjct 5401 TTTCCAAGATGGCTGGTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTT 5460
Query 94073 ACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACA 94132
|||| || ||||| || ||||| ||||| | | || ||||| || ||||||||||
Sbjct 5461 ACATTGCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACA 5520
Query 94133 ACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATC 94192
|| | || | || || |||||||||||| | | | ||| | || || |||| |
Sbjct 5521 ACACTGCCAGATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACC 5580
Query 94193 TCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACG 94252
||||||| |||||||| ||||| | ||| | || || || |||||||||||||| |
Sbjct 5581 TCGAGCCTTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGG 5640
Query 94253 ATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312
| || | || | ||| | ||| ||||||||| | || || || || ||||| |
Sbjct 5641 AAGAGGTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGC 5700
Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372
| || ||||| |||| | ||||| || | || ||||| ||||| || || ||| | |
Sbjct 5701 GTGTTGAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTGGCTG 5760
Query 94373 ACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGGCC 94431
|| | ||| | || || | ||||||| ||||| | |||| | || |
Sbjct 5761 ACTGCTATGGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTGGTC 5820
Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491
| ||| ||| ||| |||||||||| || ||| |||| | ||| |||||
Sbjct 5821 -GCAAGACTATTCGCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACT 5879
Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551
|||| |||| ||| | | |||||| | |||| |||| ||||||| || ||||
Sbjct 5880 GGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTG 5939
Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611
|| ||| ||||| || || |||||||||||| ||||||| | |||| || |||
Sbjct 5940 GGAACCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAG 5999
Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671
||||||| || ||| ||| ||| | ||| | ||| || ||| ||||
Sbjct 6000 GTTGCTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGT-CGA-----TTACA-- 6051
Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACTTCGCGGGAAGGATGGTCTTGAA 94730
| | ||| | | || | || ||||| |||| | | | || | ||| ||
Sbjct 6052 ACGAAGGCTGC-TATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGG-TTGTCCGCAA 6109
Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790
||| |||| | | || || ||| |||||| |||| |||||| ||| || |
Sbjct 6110 CCTCAACAAGATCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATAT 6169
Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850
| || || ||||| ||| | || ||||||||| | || ||||| | | ||||
Sbjct 6170 GCGCCACCGACCCATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTGCG 6229
Query 94851 TCTGCCCTACGACTCTGTCGA--CGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908
|||||| || ||| ||| | || | | |||| | | || || || | |||
Sbjct 6230 CATGCCCTTTGAGTCTCCCGAGGCTCGTCAG--CTGAACAAGCAGATCTTTGAGACCATC 6287
Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968
|| | | |||| | | || | | | |||| || | || || |||||
Sbjct 6288 TACCATGCGGCCCTTGAGGCTTCTATGGAGATCGCCA---AGGTGGAGGGTCCCTACGAA 6344
Query 94969 TCGTTCCGCGGATCGCCCTTGGAAC--AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026
|| ||| ||||| || || | | ||||||| | || |||||| | |||| ||| |
Sbjct 6345 TCATTCAAGGGATCACC--TGCATCCGAGGGCATCCTCCAATTCGACATGTGGGATGTCA 6402
Query 95027 AGCCCTCGGGTCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084
| ||||| | |||| || ||||| |||| | | || || | | | ||||||
Sbjct 6403 AACCCTCTGACCTGTGGGAGTGGGACTCGCTCAAGGAGCAGA--TCAAGGAGCACGGTAC 6460
Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144
| ||| |||| | ||||| ||||| || ||| ||| | ||||| || || ||
Sbjct 6461 GCGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAA 6520
Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204
|||||||| ||||| |||| ||| |||||| | ||| | | || || || ||||| ||
Sbjct 6521 CAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGA 6580
Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGG-GTGT-GTGGGG 95261
|||| || ||||| || || |||||| | || | |||| | | || |
Sbjct 6581 GTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGTCCGA 6640
Query 95262 TGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317
|| || | ||||||| | |||| | ||||||||| | |||||||| ||
Sbjct 6641 TGCCA---TGAAGAACCGTATCATTGCT----GAGAACGGCTCCATTCAGAACATTCCCA 6693
Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
| || || || || |||||||| || ||||||||||| |||||||| | ||||||
Sbjct 6694 ACATCCCCGAAGATATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGC 6749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494713478689120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |