Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq246 174 2e-38
seq236 163 3e-35
seq330 116 4e-21
seq301 98.7 1e-15
>seq246
Length=51316
Score = 174 bits (192), Expect = 2e-38
Identities = 506/767 (66%), Gaps = 33/767 (4%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|| ||||||||| || || ||| ||| | |||| ||||| |||||| | ||| ||
Sbjct 23705 AATGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 23646
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204
|| || ||| ||||| ||||| | | |||||| | ||| || | | ||||| |
Sbjct 23645 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATCCCCGAGGCTCG 23587
Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264
|| ||| || || || | | || ||| | | ||| | |||| ||| |||||
Sbjct 23586 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 23527
Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322
||| || || || || || || || || | ||||| | || | || || | |||
Sbjct 23526 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 23469
Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382
| | || ||| ||||||| ||||| | ||||| || ||||||||| || | | | |
Sbjct 23468 ACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 23409
Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442
| | | ||| ||||| |||| ||||| || |||||||| | || || |||
Sbjct 23408 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGT 23349
Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502
||||||| ||||||| | | || | | ||| | ||||| || ||||| || |
Sbjct 23348 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 23289
Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT 52554
|||||| | || || || ||||| || |||||||| |||||||| ||||| ||
Sbjct 23288 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT 23229
Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612
|| ||||| || | | | | ||| ||||| ||| ||| |||
Sbjct 23228 CACCTCAAGAACCGTGCTAGCAA------------GGAGGTGATCCGTGA-CATCATCAC 23182
Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672
|| || || || || ||||||| || || | || || || || ||||| ||
Sbjct 23181 TGATGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGG 23122
Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732
||||||| | | ||| ||||||| |||||||| || ||||||||| | ||
Sbjct 23121 CATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTC-- 23064
Query 52733 GCTCG-GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790
|||| |||| | | ||| || ||| || ||| || ||||| || ||| | ||||||
Sbjct 23063 GCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATT 23004
Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| || | |||||||||||||| ||||||||||| |||| ||| ||
Sbjct 23003 TCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 22957
>seq236
Length=53426
Score = 163 bits (180), Expect = 3e-35
Identities = 603/926 (65%), Gaps = 39/926 (4%)
Strand=Plus/Minus
Query 153390 GGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGA 153449
||||||||||| | || |||||||| |||||||||| ||| ||||| ||||||||
Sbjct 6235 GGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGG 6176
Query 153450 T---GCTTCTCGTTGCTGC--GCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504
| || | | | || ||| ||||| || | | || ||||| ||| ||| || |
Sbjct 6175 TGGCGCATATTGCTGTTGCGGGCCTC---CTGG--ACAGGGTAGTGGTTGACATCAATGA 6121
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564
| |||||||||||||| || ||||| || || | | | ||| |||| || ||||||
Sbjct 6120 TCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGC 6061
Query 153565 TCATTTCGTCG---ACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACG 153620
||||| | || | || ||| | | ||| | ||| |||| || || ||
Sbjct 6060 AGCCTTCGTTGTAATCGACATAAGCAGGG----AGGGCCAAAGAGGCCAAGTTGCAAACA 6005
Query 153621 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATG 153680
|| ||| || | | | ||||| | ||||||| |||||||||| || |||
Sbjct 6004 GCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATG 5945
Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740
|||| || | ||| ||||| ||||| ||||| || || ||| |||||||| | ||
Sbjct 5944 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGG 5885
Query 153741 CCGCCGGTCTCGACTTGCGTTTCGACGAT--AAACCTATGCAGGTCCTGCGCTCGCACCC 153798
|| |||||| || | ||| | ||| || | | ||| | ||| || || |
Sbjct 5884 TTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGAGCGCGAATAG 5827
Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858
|| ||| || ||||| ||||||||| ||| |||| ||| ||||| ||||| |
Sbjct 5826 TCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCAT 5767
Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGG 153915
||||||| || ||||| || || | | || ||||| |||| ||| || | ||
Sbjct 5766 AGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTT 5709
Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975
| | || || |||||| ||||| || | |||||| || | | |||||| ||
Sbjct 5708 C-TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGC 5650
Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTG 154033
| || ||| ||| ||| || | |||| || | | ||| |||||||||
Sbjct 5649 GGACCTCTTCCTTGCCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTG 5592
Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090
||| || || | ||||| ||| | |||||| |||| || || ||||| || || |
Sbjct 5591 CCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATA 5532
Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
| | | ||||||||||| || | |||||| | ||| | | ||| ||||||||
Sbjct 5531 TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGT 5472
Query 154151 CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GC 154209
| || | |||| ||| || | |||| ||||| | ||| || || || ||
Sbjct 5471 GCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGC 5412
Query 154210 CGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCG 154268
| | ||| || || || || ||| ||| || ||||| || ||||||||||||
Sbjct 5411 CAT-CTTGGAAATCATGGCACATGTC-TTCAGAGTGTCATAGATACCCTCGATGCTATCG 5354
Query 154269 TCGCGGACGCCGAGCAAGAAACACGA 154294
|| | | ||| |||||| || ||
Sbjct 5353 TCCTTCATGTCGACCAAGAAGCATGA 5328
>seq330
Length=39978
Score = 116 bits (128), Expect = 4e-21
Identities = 168/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGA-CTCCTTTTGAATGTTGTAGTCGC 138445
||| || |||| ||||| || || || | || || |||||| || |||||||||||||
Sbjct 14741 GCCACCACGCAGACGCAGGACCAAGTGCA-GTGTGCTCTCCTTCTGGATGTTGTAGTCGC 14799
Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
||| || || ||| || || || ||||| | | |||| | ||||| ||||| ||||
Sbjct 14800 TCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAG 14859
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563
| || || || ||||| ||| | || | || | ||| || | |||||||| || ||
Sbjct 14860 GAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTC 14917
Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||||| || | || || || |||||||| || || |||||||||||
Sbjct 14918 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 102 bits (112), Expect = 8e-17
Identities = 141/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||| || || || || | | |
Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540
||| |||||||| || ||||| || ||||| || ||||| ||| | |||| ||| ||
Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTC-CTGAATCTTTGATTTGACAT 15123
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
|| || | |||||| | || || ||||| | || | || || || |||| || ||
Sbjct 15124 TG-TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 15182
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 15183 ACGAAGATCTGCAT 15196
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| || ||| || ||||||||||| || || |
Sbjct 15517 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 15576
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || |||||||| ||||| ||||| || ||||| || || ||| || || | |
Sbjct 15577 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACTTCACA 15636
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| |||| ||||| ||||||| || | || || || || || || ||
Sbjct 15637 TTG-TCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 15695
Query 138600 TACAAAAATCTGCATGG 138616
|| || || |||||||
Sbjct 15696 GACGAAGATTTGCATGG 15712
>seq301
Length=43884
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || || ||||| | |||| | ||||| |||||||| ||
Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | |||||||| ||||||||
Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 7686
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||| || || || || || || || |||||||||||
Sbjct 7687 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496252648443840
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