Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq246 174 2e-38 seq236 163 3e-35 seq330 116 4e-21 seq301 98.7 1e-15 >seq246 Length=51316 Score = 174 bits (192), Expect = 2e-38 Identities = 506/767 (66%), Gaps = 33/767 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 || ||||||||| || || ||| ||| | |||| ||||| |||||| | ||| || Sbjct 23705 AATGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 23646 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | | ||||| | Sbjct 23645 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATCCCCGAGGCTCG 23587 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 23586 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 23527 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322 ||| || || || || || || || || | ||||| | || | || || | ||| Sbjct 23526 CATCGA-CACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 23469 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | | || ||| ||||||| ||||| | ||||| || ||||||||| || | | | | Sbjct 23468 ACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 23409 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | | | ||| ||||| |||| ||||| || |||||||| | || || ||| Sbjct 23408 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGT 23349 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||||||| ||||||| | | || | | ||| | ||||| || ||||| || | Sbjct 23348 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 23289 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT 52554 |||||| | || || || ||||| || |||||||| |||||||| ||||| || Sbjct 23288 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT 23229 Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCC-TGAGCATGTTCAA 52612 || ||||| || | | | | ||| ||||| ||| ||| ||| Sbjct 23228 CACCTCAAGAACCGTGCTAGCAA------------GGAGGTGATCCGTGA-CATCATCAC 23182 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || || || ||||||| || || | || || || || ||||| || Sbjct 23181 TGATGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGG 23122 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | | ||| ||||||| |||||||| || ||||||||| | || Sbjct 23121 CATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTC-- 23064 Query 52733 GCTCG-GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 |||| |||| | | ||| || ||| || ||| || ||||| || ||| | |||||| Sbjct 23063 GCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATT 23004 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || | |||||||||||||| ||||||||||| |||| ||| || Sbjct 23003 TCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 22957 >seq236 Length=53426 Score = 163 bits (180), Expect = 3e-35 Identities = 603/926 (65%), Gaps = 39/926 (4%) Strand=Plus/Minus Query 153390 GGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGA 153449 ||||||||||| | || |||||||| |||||||||| ||| ||||| |||||||| Sbjct 6235 GGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGG 6176 Query 153450 T---GCTTCTCGTTGCTGC--GCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504 | || | | | || ||| ||||| || | | || ||||| ||| ||| || | Sbjct 6175 TGGCGCATATTGCTGTTGCGGGCCTC---CTGG--ACAGGGTAGTGGTTGACATCAATGA 6121 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | |||||||||||||| || ||||| || || | | | ||| |||| || |||||| Sbjct 6120 TCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGC 6061 Query 153565 TCATTTCGTCG---ACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACG 153620 ||||| | || | || ||| | | ||| | ||| |||| || || || Sbjct 6060 AGCCTTCGTTGTAATCGACATAAGCAGGG----AGGGCCAAAGAGGCCAAGTTGCAAACA 6005 Query 153621 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATG 153680 || ||| || | | | ||||| | ||||||| |||||||||| || ||| Sbjct 6004 GCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATG 5945 Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 |||| || | ||| ||||| ||||| ||||| || || ||| |||||||| | || Sbjct 5944 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGG 5885 Query 153741 CCGCCGGTCTCGACTTGCGTTTCGACGAT--AAACCTATGCAGGTCCTGCGCTCGCACCC 153798 || |||||| || | ||| | ||| || | | ||| | ||| || || | Sbjct 5884 TTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGAGCGCGAATAG 5827 Query 153799 GCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGT 153858 || ||| || ||||| ||||||||| ||| |||| ||| ||||| ||||| | Sbjct 5826 TCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCAT 5767 Query 153859 AGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGTCGG 153915 ||||||| || ||||| || || | | || ||||| |||| ||| || | || Sbjct 5766 AGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--TCTT 5709 Query 153916 CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 153975 | | || || |||||| ||||| || | |||||| || | | |||||| || Sbjct 5708 C-TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGC 5650 Query 153976 TGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTG 154033 | || ||| ||| ||| || | |||| || | | ||| ||||||||| Sbjct 5649 GGACCTCTTCCTTGCCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTG 5592 Query 154034 CCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTG 154090 ||| || || | ||||| ||| | |||||| |||| || || ||||| || || | Sbjct 5591 CCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATA 5532 Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 | | | ||||||||||| || | |||||| | ||| | | ||| |||||||| Sbjct 5531 TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGT 5472 Query 154151 CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GC 154209 | || | |||| ||| || | |||| ||||| | ||| || || || || Sbjct 5471 GCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGC 5412 Query 154210 CGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCG 154268 | | ||| || || || || ||| ||| || ||||| || |||||||||||| Sbjct 5411 CAT-CTTGGAAATCATGGCACATGTC-TTCAGAGTGTCATAGATACCCTCGATGCTATCG 5354 Query 154269 TCGCGGACGCCGAGCAAGAAACACGA 154294 || | | ||| |||||| || || Sbjct 5353 TCCTTCATGTCGACCAAGAAGCATGA 5328 >seq330 Length=39978 Score = 116 bits (128), Expect = 4e-21 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGA-CTCCTTTTGAATGTTGTAGTCGC 138445 ||| || |||| ||||| || || || | || || |||||| || ||||||||||||| Sbjct 14741 GCCACCACGCAGACGCAGGACCAAGTGCA-GTGTGCTCTCCTTCTGGATGTTGTAGTCGC 14799 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 ||| || || ||| || || || ||||| | | |||| | ||||| ||||| |||| Sbjct 14800 TCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAG 14859 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTC 138563 | || || || ||||| ||| | || | || | ||| || | |||||||| || || Sbjct 14860 GAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTC 14917 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || | || || || |||||||| || || ||||||||||| Sbjct 14918 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||| || || || || | | | Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540 ||| |||||||| || ||||| || ||||| || ||||| ||| | |||| ||| || Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTC-CTGAATCTTTGATTTGACAT 15123 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | || || ||||| | || | || || || |||| || || Sbjct 15124 TG-TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTG 15182 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 15183 ACGAAGATCTGCAT 15196 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 15517 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 15576 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| ||||| ||||| || ||||| || || ||| || || | | Sbjct 15577 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACTTCACA 15636 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||||| ||||||| || | || || || || || || || Sbjct 15637 TTG-TCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 15695 Query 138600 TACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 15696 GACGAAGATTTGCATGG 15712 >seq301 Length=43884 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || ||||| | |||| | ||||| |||||||| || Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | |||||||| |||||||| Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACTCCAC 7686 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || || || || || || ||||||||||| Sbjct 7687 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252648443840