Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq246 158 1e-33 seq330 138 1e-27 seq301 127 2e-24 seq236 125 7e-24 seq61 100 3e-16 seq23 95.1 1e-14 >seq246 Length=51316 Score = 158 bits (174), Expect = 1e-33 Identities = 480/727 (66%), Gaps = 21/727 (3%) Strand=Plus/Minus Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920 ||||||||||||||||| | || |||| |||||| ||| | |||||| | | |||| Sbjct 23671 TGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGC 23613 Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979 | | || || | ||||| | | ||| ||| || | | || || | Sbjct 23612 GGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 23553 Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038 |||||| | || | ||| ||| ||||| || || |||||| || ||| || ||| Sbjct 23552 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGA-GAACAGCCAGCG 23494 Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 ||| || || || |||| | |||| ||| || ||| | |||| |||||||| |||| Sbjct 23493 CAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGG 23435 Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157 |||| |||| || | || | ||| | | ||| | || || | || || || Sbjct 23434 CCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTG 23375 Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217 ||||||||| |||||||| || |||||| | || || | | || | || Sbjct 23374 CCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAG 23315 Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277 | | ||||| || || || ||| ||||||||| ||||| | ||||| || ||||||| Sbjct 23314 GTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACA 23255 Query 47278 CCAACTTTGCCTGTCT-CT--ACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGC 47331 | |||||||||| || || ||| || | | ||| || | | ||| || ||| Sbjct 23254 CTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCTAGCAAG---GAGGTGA 23198 Query 47332 CCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGG 47391 | ||| ||||| | | || || ||| |||||| |||||| || |||||| Sbjct 23197 TC--CGT----GACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGG 23144 Query 47392 CTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451 |||| ||| | | | || |||||| | | |||||| ||||||| || |||| Sbjct 23143 CTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTG 23084 Query 47452 TCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCAT 47511 | ||||| || ||||| || ||| | ||||| ||| | | | || || | Sbjct 23083 TTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAACCCCT 23024 Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 | || || ||| | |||||||| |||| |||||||||||||| |||||||||||||||| Sbjct 23023 TTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 22964 Query 47572 GCGAATA 47578 ||| || Sbjct 22963 CCGACTA 22957 >seq330 Length=39978 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||| || || || ||||| |||| | Sbjct 14742 CCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 14801 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| ||||||| |||||||| || ||||| Sbjct 14802 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 14861 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| |||| |||||| | | || || Sbjct 14862 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTCCAC 14920 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || |||||||||||||| || || ||||||||||| Sbjct 14921 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | || || ||| || ||||| || ||| Sbjct 15228 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCA 15287 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 15288 GCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 15347 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | ||| || |||| ||| | || || || || || || Sbjct 15348 ACGTTG-TCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 15406 Query 127096 TTTTAC 127101 || || Sbjct 15407 CTTGAC 15412 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| |||| || |||||| || || ||||| || ||||| | Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040 ||| | ||||||||||| || || || |||||||||||| ||| | | || |||| | Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGATTTGACAT 15123 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | || || || | || | || |||||||||| || || | Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183 Query 127101 CAAAAATCTGCAT 127113 | || |||||||| Sbjct 15184 CGAAGATCTGCAT 15196 >seq301 Length=43884 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 7505 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 7564 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 7565 GAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 7624 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 7625 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 7684 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 7685 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 >seq236 Length=53426 Score = 125 bits (138), Expect = 7e-24 Identities = 639/994 (64%), Gaps = 41/994 (4%) Strand=Plus/Minus Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096 ||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || || Sbjct 6623 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 6564 Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156 | | | || | |||| ||| | |||||||| ||||||||||||| || ||||| | Sbjct 6563 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGA 6504 Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215 ||| | || || ||||| || | ||||| ||| | | ||||| || ||| | Sbjct 6503 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG-A 6445 Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275 ||| ||| || | ||| | ||||| | || | ||| | || || | ||| Sbjct 6444 TCTGCTCCTTGAGCGAGTCCCACTCCCACA---GGTCAGAGGGTTTGACATCCCACATGT 6388 Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332 || | || | || || |||| |||| | || || | | ||||| || ||||| | Sbjct 6387 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAATGATTCGTAGGGACCCT 6331 Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 | | |||||| | || ||| || || |||| | ||| |||||||| |||| Sbjct 6330 CCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCT 6271 Query 146393 TGTAGTTGACGCT-CCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA---AAG 146448 | ||| | ||| | ||||| || |||| || | | || || || Sbjct 6270 GCTTGTTCA-GCTGACGAGCCTCGGGAGACTCAAAGGGCAT---GCGCAGGGCAAGGAAA 6215 Query 146449 GCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGC 146507 |||||||| |||||||| | || || |||| ||| ||||| | | || ||||| || Sbjct 6214 GCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGG 6155 Query 146508 AGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAAT 146567 | || | | ||| ||||||||| || |||||||||||||| || || || || | Sbjct 6154 GCCTCCTGGACAGGG-TAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAACCAC 6096 Query 146568 TTTCGTCAAACGATTCAGCAGGACATAGTCAAA--TGTTTTAGTTTTAACGTTGACGCAC 146625 || || | || ||| | ||||| | | || ||| ||| | ||| | Sbjct 6095 CTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAA--TCGACATAA 6038 Query 146626 TTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGC 146685 || ||| | |||||||||||| || || ||| ||| || | || |||| Sbjct 6037 GCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCG 5978 Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 | |||||||| |||||||||| || |||| | |||| || || ||||| || | Sbjct 5977 ATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---C 5921 Query 146746 TT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCG 146802 || |||||||| ||||||||||||||| | || || || ||| | || || Sbjct 5920 TTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCC 5861 Query 146803 ACGAT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTT 146859 | ||| |||| | || | | |||| | | | ||||| || || || | | | Sbjct 5860 AGGATGGAAT---ACCACAGCTTCTGAGCGCGAATAGTCTTGCGACCACGTCCCTCCCTC 5804 Query 146860 TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917 ||||||||||| ||||| || || || | || || ||| ||||| || Sbjct 5803 TCGTATTTCTCATACAAAGCCTCGAACTCCTCG--CCATAGCAGTCAGCCAGGCCAGGGC 5746 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977 | | ||||| || | |||| ||| || |||| || || || | ||| || | || Sbjct 5745 ATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGAT 5686 Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011 |||||||||| || | || | |||||||||||| Sbjct 5685 CGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC 5652 >seq61 Length=119690 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || ||| || || || ||||| || |||||||||||| Sbjct 2945 TTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTGCTTACCAGCGTAGATC 2886 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 || |||||||| || || | |||||||| |||||| || || ||||| |||| || Sbjct 2885 AAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTTG-TC 2827 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | | || || | || ||| | || |||||||| | || || || || Sbjct 2826 GATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGTCTTGACGAA 2767 Query 127105 AATCTGCAT 127113 |||||| || Sbjct 2766 AATCTGTAT 2758 >seq23 Length=158060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| ||||| Sbjct 67396 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 67455 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 67456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 67515 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 67516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 67575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491456409280