Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq246 158 1e-33
seq330 138 1e-27
seq301 127 2e-24
seq236 125 7e-24
seq61 100 3e-16
seq23 95.1 1e-14
>seq246
Length=51316
Score = 158 bits (174), Expect = 1e-33
Identities = 480/727 (66%), Gaps = 21/727 (3%)
Strand=Plus/Minus
Query 46861 TGGCCTTCTTTGCCGCCGCCGACAGCATAGTCAACATCAACATCATCGAGCACATGCAGC 46920
||||||||||||||||| | || |||| |||||| ||| | |||||| | | ||||
Sbjct 23671 TGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGC 23613
Query 46921 GCACCGTGCCCGAACTG-GAGGCGCAGTACTTTTACAATCAACAAGTGCTCATCGAATGC 46979
| | || || | ||||| | | ||| ||| || | | || || |
Sbjct 23612 GGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAAC 23553
Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGCA 47038
|||||| | || | ||| ||| ||||| || || |||||| || ||| || |||
Sbjct 23552 ATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGA-GAACAGCCAGCG 23494
Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097
||| || || || |||| | |||| ||| || ||| | |||| |||||||| ||||
Sbjct 23493 CAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGG 23435
Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157
|||| |||| || | || | ||| | | ||| | || || | || || ||
Sbjct 23434 CCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTG 23375
Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217
||||||||| |||||||| || |||||| | || || | | || | ||
Sbjct 23374 CCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAG 23315
Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277
| | ||||| || || || ||| ||||||||| ||||| | ||||| || |||||||
Sbjct 23314 GTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACA 23255
Query 47278 CCAACTTTGCCTGTCT-CT--ACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTGC 47331
| |||||||||| || || ||| || | | ||| || | | ||| || |||
Sbjct 23254 CTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCTAGCAAG---GAGGTGA 23198
Query 47332 CCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGG 47391
| ||| ||||| | | || || ||| |||||| |||||| || ||||||
Sbjct 23197 TC--CGT----GACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGG 23144
Query 47392 CTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451
|||| ||| | | | || |||||| | | |||||| ||||||| || ||||
Sbjct 23143 CTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTG 23084
Query 47452 TCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCAT 47511
| ||||| || ||||| || ||| | ||||| ||| | | | || || |
Sbjct 23083 TTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAACCCCT 23024
Query 47512 TCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571
| || || ||| | |||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 23023 TTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 22964
Query 47572 GCGAATA 47578
||| ||
Sbjct 22963 CCGACTA 22957
>seq330
Length=39978
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||| || || || ||||| |||| |
Sbjct 14742 CCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 14801
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || ||||| ||||||| |||||||| || |||||
Sbjct 14802 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 14861
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||||| |||| |||| |||||| | | || ||
Sbjct 14862 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGATTCCAC 14920
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || |||||||||||||| || || |||||||||||
Sbjct 14921 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 95.1 bits (104), Expect = 1e-14
Identities = 134/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | || || ||| || ||||| || |||
Sbjct 15228 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCA 15287
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| ||||||||| || ||||| ||||||||||||||| ||| || ||||
Sbjct 15288 GCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 15347
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||| || | ||| || |||| ||| | || || || || || ||
Sbjct 15348 ACGTTG-TCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 15406
Query 127096 TTTTAC 127101
|| ||
Sbjct 15407 CTTGAC 15412
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| |||| || |||||| || || ||||| || ||||| |
Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTT 127040
||| | ||||||||||| || || || |||||||||||| ||| | | || |||| |
Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGATTTGACAT 15123
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
|||| |||||| | || || || | || | || |||||||||| || || |
Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183
Query 127101 CAAAAATCTGCAT 127113
| || ||||||||
Sbjct 15184 CGAAGATCTGCAT 15196
>seq301
Length=43884
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| |||| || | |||||||| || || || ||||| |||
Sbjct 7505 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 7564
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || || ||| || ||||| || |||||| |||||||||||||||| || ||
Sbjct 7565 GAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 7624
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||||| | |||| |||||| | | |||
Sbjct 7625 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 7684
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | ||| || || || || || || || |||||||||||
Sbjct 7685 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734
>seq236
Length=53426
Score = 125 bits (138), Expect = 7e-24
Identities = 639/994 (64%), Gaps = 41/994 (4%)
Strand=Plus/Minus
Query 146037 GTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCG 146096
||| || ||| |||||| || | ||||||| ||||| ||||||||||| || || ||
Sbjct 6623 GTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACG 6564
Query 146097 CCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGC 146156
| | | || | |||| ||| | |||||||| ||||||||||||| || ||||| |
Sbjct 6563 TCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGA 6504
Query 146157 CGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAA 146215
||| | || || ||||| || | ||||| ||| | | ||||| || ||| |
Sbjct 6503 CGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG-A 6445
Query 146216 TCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGT 146275
||| ||| || | ||| | ||||| | || | ||| | || || | |||
Sbjct 6444 TCTGCTCCTTGAGCGAGTCCCACTCCCACA---GGTCAGAGGGTTTGACATCCCACATGT 6388
Query 146276 CGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAAGGACCGT 146332
|| | || | || || |||| |||| | || || | | ||||| || ||||| |
Sbjct 6387 CGAATTGGAGGATGCCCTCGGATGCAGGTG---ATCCCTTGAATGATTCGTAGGGACCCT 6331
Query 146333 CGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392
| | |||||| | || ||| || || |||| | ||| |||||||| ||||
Sbjct 6330 CCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCT 6271
Query 146393 TGTAGTTGACGCT-CCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACA---AAG 146448
| ||| | ||| | ||||| || |||| || | | || || ||
Sbjct 6270 GCTTGTTCA-GCTGACGAGCCTCGGGAGACTCAAAGGGCAT---GCGCAGGGCAAGGAAA 6215
Query 146449 GCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGC 146507
|||||||| |||||||| | || || |||| ||| ||||| | | || ||||| ||
Sbjct 6214 GCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGG 6155
Query 146508 AGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAAT 146567
| || | | ||| ||||||||| || |||||||||||||| || || || || |
Sbjct 6154 GCCTCCTGGACAGGG-TAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAACCAC 6096
Query 146568 TTTCGTCAAACGATTCAGCAGGACATAGTCAAA--TGTTTTAGTTTTAACGTTGACGCAC 146625
|| || | || ||| | ||||| | | || ||| ||| | ||| |
Sbjct 6095 CTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAA--TCGACATAA 6038
Query 146626 TTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGC 146685
|| ||| | |||||||||||| || || ||| ||| || | || ||||
Sbjct 6037 GCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCG 5978
Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745
| |||||||| |||||||||| || |||| | |||| || || ||||| || |
Sbjct 5977 ATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCT---C 5921
Query 146746 TT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCG 146802
|| |||||||| ||||||||||||||| | || || || ||| | || ||
Sbjct 5920 TTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCC 5861
Query 146803 ACGAT-GAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACA-GTTTATTCTTT 146859
| ||| |||| | || | | |||| | | | ||||| || || || | | |
Sbjct 5860 AGGATGGAAT---ACCACAGCTTCTGAGCGCGAATAGTCTTGCGACCACGTCCCTCCCTC 5804
Query 146860 TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917
||||||||||| ||||| || || || | || || ||| ||||| ||
Sbjct 5803 TCGTATTTCTCATACAAAGCCTCGAACTCCTCG--CCATAGCAGTCAGCCAGGCCAGGGC 5746
Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977
| | ||||| || | |||| ||| || |||| || || || | ||| || | ||
Sbjct 5745 ATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGAT 5686
Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC 147011
|||||||||| || | || | ||||||||||||
Sbjct 5685 CGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC 5652
>seq61
Length=119690
Score = 100 bits (110), Expect = 3e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| |||| || ||| || || || ||||| || ||||||||||||
Sbjct 2945 TTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTGCTTACCAGCGTAGATC 2886
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
|| |||||||| || || | |||||||| |||||| || || ||||| |||| ||
Sbjct 2885 AAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTTG-TC 2827
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| |||||| | | || || | || ||| | || |||||||| | || || || ||
Sbjct 2826 GATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGTCTTGACGAA 2767
Query 127105 AATCTGCAT 127113
|||||| ||
Sbjct 2766 AATCTGTAT 2758
>seq23
Length=158060
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || ||||| |||||
Sbjct 67396 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 67455
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
||||||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 67456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 67515
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || ||||| ||||| || || || |||
Sbjct 67516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 67575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475491456409280
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