Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq236 223 4e-53
seq246 140 4e-28
seq24 84.2 3e-11
>seq236
Length=53426
Score = 223 bits (246), Expect = 4e-53
Identities = 1137/1784 (64%), Gaps = 59/1784 (3%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||| || || ||| ||||| | || ||||||||||| || |||||||| |
Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
| |||||||| || | ||||| || | |||| | ||| ||| | ||||
Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 6814
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| ||||| ||||| ||||| ||||| || ||||| |||||||| | | ||
Sbjct 6813 GGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CA 6755
Query 115706 CATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761
|| || ||| | ||||| || || |||| || ||| ||||| || |||
Sbjct 6754 -AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGG 6698
Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCC 115818
|| | || || || || ||||| || | |||| | | |||||| |
Sbjct 6697 ATGTTGGGAATGTTCTGAATGGAGCCGTT---CTCAGCAATGATACGGTTCTTCATGGCA 6641
Query 115819 TTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAAC 115874
| |||||||| ||| | | || |||| | | ||| | ||||||||
Sbjct 6640 TCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGACAACCTG 6585
Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934
||||| || || ||| |||| | | |||||||||| ||||| ||||| ||||||||
Sbjct 6584 GAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTC 6525
Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
|||||||||| || |||| || ||| || ||||| || || | ||| | ||||||
Sbjct 6524 GTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTT 6465
Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTT-GAGC- 116049
||| ||| | || | || | |||||||| | |||||| || | || |||
Sbjct 6464 GCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGG 6405
Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109
|||| | |||||||| || || |||||||| || | ||| || || |||||||
Sbjct 6404 TTTGACA-----TCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTG 6350
Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 116169
|||| || || || ||||| |||| || | || ||||| ||||| || ||
Sbjct 6349 AATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGG 6290
Query 116170 TACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228
|| || |||||||| || | |||| || | | ||||| || ||||| | |
Sbjct 6289 TAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCAT 6231
Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288
|| || || | || || ||||| |||||||| | |||||| || || || |
Sbjct 6230 GCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCG 6171
Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348
|||||| || || || || || || || || ||| || | | | || ||
Sbjct 6170 CATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAG 6111
Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408
|| | || ||||| |||| |||||||||||| | | ||| | | || |
Sbjct 6110 GTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTT 6051
Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468
| || |||||| ||| ||||| | || |||| || || |||| ||||||
Sbjct 6050 GTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGG 5991
Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528
| || |||||| ||||| || || || | || || || ||||| |||| ||||||
Sbjct 5990 AGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 5931
Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588
|| || ||| ||| || ||||||||||||||||| | || | || ||||| ||
Sbjct 5930 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 5871
Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647
|||| | || || | | ||| | | || | | | | | ||| | | || |
Sbjct 5870 CTGGGCTTCCAGGATGGAATACCACAGCTTCTGAG-CGCGAATAGTCTTGCGACCACGTC 5812
Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGC 116706
||||| |||||| || || | ||||| ||||| || || | ||| || | ||
Sbjct 5811 CCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCC-ATAGCAGTCAGCCAGG 5753
Query 116707 CCTGGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTC--CTCAACCCGCTTC 116763
|| || || || ||| || | ||| | ||| | ||| || |||||| ||||||
Sbjct 5752 CCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGCTTC 5696
Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823
|||||||| || || |||||||| || ||| | || ||| ||| | ||||| |
Sbjct 5695 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTG 5636
Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883
|| || || || | || | || || | || || |||||||| || || |||||
Sbjct 5635 CCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAG 5576
Query 116884 ACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937
| || | | || | |||| |||| |||||| ||||| || || || |
Sbjct 5575 ATGGCAAAGGCACCAGGACGCTTG---TTACCACCCTGGTCAACATATCTGGCAGTGTTG 5519
Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA 116997
|| || || |||||||| ||||| ||||| | ||| || || || || ||| |
Sbjct 5518 TTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAA 5459
Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057
|| | |||| | || |||| || || || ||||| || ||| ||| || ||
Sbjct 5458 GAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATC 5399
Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117
|| || | | ||| || | ||||| || ||||| || |||| | |||
Sbjct 5398 ATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACC 5339
Query 117118 AGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 117176
| |||||| |||| || ||| | || ||||| |||||||| ||||| || | ||
Sbjct 5338 AAGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGC 5280
Query 117177 GTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCT 117234
|| ||| | | |||| ||||| | ||| ||||||| |||| ||||||
Sbjct 5279 ATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCG 5222
Query 117235 TCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278
|| || || || | || || ||||||| ||||| |||||
Sbjct 5221 TCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178
>seq246
Length=51316
Score = 140 bits (154), Expect = 4e-28
Identities = 529/820 (65%), Gaps = 29/820 (4%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| |||| ||||||||||||||||| ||||| ||| |||| || ||||||||
Sbjct 22956 GTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCAT 23015
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349
|| ||||| ||||| || || | || | | | || | | || ||||
Sbjct 23016 GAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTAGAGCGACA-AGCAGAC 23074
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
|||| | || |||||||||||| |||| | |||||||| || | ||| |
Sbjct 23075 GATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGC 23134
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469
| ||||| || || | |||| ||| |||||| ||||| || | |||| |
Sbjct 23135 AGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCAC 23194
Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG----- 127520
| || |||| | ||| || |||||| ||||| | |||
Sbjct 23195 GGAT------CACCTCCTTGCTAGCACGGT---TCTTGAGGTGAGAGTGCAGCAGGCAGG 23245
Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580
|||| || ||| |||||||||||||| |||||||| || || || ||| |||||| |
Sbjct 23246 CAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAG 23305
Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640
|||||||||| |||||||| | |||||| || | ||| | || ||||||||| |
Sbjct 23306 GCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATAC 23365
Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACC 127700
|||| || || || |||| || |||| ||||||||| | ||| | | ||
Sbjct 23366 CCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCC 23425
Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760
|||| || ||||| | ||||| || || || || | ||||| || || | ||||
Sbjct 23426 ACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGA 23485
Query 127761 -GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 127818
|| || | | ||| | || |||||||| | || ||||| || || || ||
Sbjct 23486 GGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 23543
Query 127819 GCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877
| ||||| | | ||| || | ||| | ||||||| | || || ||| ||||
Sbjct 23544 GGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCT 23602
Query 127878 GTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 127937
| ||||| || || | | ||||| ||||| ||||| || | ||||
Sbjct 23603 GGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAA 23662
Query 127938 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 127994
| || |||||||| | ||||| | || || | || |||| || | ||||| |
Sbjct 23663 AGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAAT 23722
Query 127995 CGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||| |||||||| || ||||| | ||| || || |||||
Sbjct 23723 CGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762
>seq24
Length=157561
Score = 84.2 bits (92), Expect = 3e-11
Identities = 186/272 (68%), Gaps = 14/272 (5%)
Strand=Plus/Minus
Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934
||||| ||||| |||||||||||||| | ||| || ||| ||| | || | ||||
Sbjct 125042 ACCGATAGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCG---ACCTTC 124986
Query 12935 A---AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991
| || | |||| ||| | | ||| ||||| |||||||||||||| || | |
Sbjct 124985 AGCGAACAAGTCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGA 124926
Query 12992 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050
|| || | || ||| || ||| || || || || | || |||||| || |
Sbjct 124925 TCCGCTCACGCT-GAAGAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 124867
Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACT 13108
|||| || || |||||| || ||||||| |||||| || || ||| ||||||| ||
Sbjct 124866 TCTTTCCTGTTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCT 124807
Query 13109 TC-CAAAGTAGCGCTCGGGTTGTTTAAGAAAG 13139
|| |||| | ||||||||| || || |||
Sbjct 124806 TCTCAAACT---TCTCGGGTTGCTTCAGGAAG 124778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613495144583520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |