Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq236 223 4e-53 seq246 140 4e-28 seq24 84.2 3e-11 >seq236 Length=53426 Score = 223 bits (246), Expect = 4e-53 Identities = 1137/1784 (64%), Gaps = 59/1784 (3%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| || || ||| ||||| | || ||||||||||| || |||||||| | Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 | |||||||| || | ||||| || | |||| | ||| ||| | |||| Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 6814 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || ||||| ||||| ||||| ||||| || ||||| |||||||| | | || Sbjct 6813 GGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CA 6755 Query 115706 CATCCTTCATCTTGA----TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGG 115761 || || ||| | ||||| || || |||| || ||| ||||| || ||| Sbjct 6754 -AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGG 6698 Query 115762 ATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGA---TCCTTCATATCC 115818 || | || || || || ||||| || | |||| | | |||||| | Sbjct 6697 ATGTTGGGAATGTTCTGAATGGAGCCGTT---CTCAGCAATGATACGGTTCTTCATGGCA 6641 Query 115819 TTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGACAACAAC 115874 | |||||||| ||| | | || |||| | | ||| | |||||||| Sbjct 6640 TCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGACAACCTG 6585 Query 115875 AAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 ||||| || || ||| |||| | | |||||||||| ||||| ||||| |||||||| Sbjct 6584 GAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTC 6525 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||| || |||| || ||| || ||||| || || | ||| | |||||| Sbjct 6524 GTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTT 6465 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTT-GAGC- 116049 ||| ||| | || | || | |||||||| | |||||| || | || ||| Sbjct 6464 GCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGG 6405 Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109 |||| | |||||||| || || |||||||| || | ||| || || ||||||| Sbjct 6404 TTTGACA-----TCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTG 6350 Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 116169 |||| || || || ||||| |||| || | || ||||| ||||| || || Sbjct 6349 AATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGG 6290 Query 116170 TACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228 || || |||||||| || | |||| || | | ||||| || ||||| | | Sbjct 6289 TAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCAT 6231 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 || || || | || || ||||| |||||||| | |||||| || || || | Sbjct 6230 GCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCG 6171 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 |||||| || || || || || || || || ||| || | | | || || Sbjct 6170 CATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAG 6111 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || | || ||||| |||| |||||||||||| | | ||| | | || | Sbjct 6110 GTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTT 6051 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 | || |||||| ||| ||||| | || |||| || || |||| |||||| Sbjct 6050 GTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGG 5991 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 | || |||||| ||||| || || || | || || || ||||| |||| |||||| Sbjct 5990 AGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTT 5931 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 || || ||| ||| || ||||||||||||||||| | || | || ||||| || Sbjct 5930 CTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGT 5871 Query 116589 TTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 |||| | || || | | ||| | | || | | | | | ||| | | || | Sbjct 5870 CTGGGCTTCCAGGATGGAATACCACAGCTTCTGAG-CGCGAATAGTCTTGCGACCACGTC 5812 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGC 116706 ||||| |||||| || || | ||||| ||||| || || | ||| || | || Sbjct 5811 CCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCC-ATAGCAGTCAGCCAGG 5753 Query 116707 CCTGGTGCCTTATCTGGA-CAGAAGAGAGACCATTGACCACCCTC--CTCAACCCGCTTC 116763 || || || || ||| || | ||| | ||| | ||| || |||||| |||||| Sbjct 5752 CCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTCTTCTCAACACGCTTC 5696 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 |||||||| || || |||||||| || ||| | || ||| ||| | ||||| | Sbjct 5695 ATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTG 5636 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || || | || | || || | || || |||||||| || || ||||| Sbjct 5635 CCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAG 5576 Query 116884 ACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 | || | | || | |||| |||| |||||| ||||| || || || | Sbjct 5575 ATGGCAAAGGCACCAGGACGCTTG---TTACCACCCTGGTCAACATATCTGGCAGTGTTG 5519 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA 116997 || || || |||||||| ||||| ||||| | ||| || || || || ||| | Sbjct 5518 TTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAA 5459 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 117057 || | |||| | || |||| || || || ||||| || ||| ||| || || Sbjct 5458 GAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATC 5399 Query 117058 TGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 117117 || || | | ||| || | ||||| || ||||| || |||| | ||| Sbjct 5398 ATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACC 5339 Query 117118 AGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 117176 | |||||| |||| || ||| | || ||||| |||||||| ||||| || | || Sbjct 5338 AAGAAGCATGAGGACAGCTG-GGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGC 5280 Query 117177 GTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCT 117234 || ||| | | |||| ||||| | ||| ||||||| |||| |||||| Sbjct 5279 ATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCG 5222 Query 117235 TCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 || || || || | || || ||||||| ||||| ||||| Sbjct 5221 TCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178 >seq246 Length=51316 Score = 140 bits (154), Expect = 4e-28 Identities = 529/820 (65%), Gaps = 29/820 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| ||| |||| || |||||||| Sbjct 22956 GTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCAT 23015 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 || ||||| ||||| || || | || | | | || | | || |||| Sbjct 23016 GAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTAGAGCGACA-AGCAGAC 23074 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | || |||||||||||| |||| | |||||||| || | ||| | Sbjct 23075 GATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGC 23134 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||| || || | |||| ||| |||||| ||||| || | |||| | Sbjct 23135 AGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCAC 23194 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG----- 127520 | || |||| | ||| || |||||| ||||| | ||| Sbjct 23195 GGAT------CACCTCCTTGCTAGCACGGT---TCTTGAGGTGAGAGTGCAGCAGGCAGG 23245 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 |||| || ||| |||||||||||||| |||||||| || || || ||| |||||| | Sbjct 23246 CAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAG 23305 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 |||||||||| |||||||| | |||||| || | ||| | || ||||||||| | Sbjct 23306 GCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATAC 23365 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACC 127700 |||| || || || |||| || |||| ||||||||| | ||| | | || Sbjct 23366 CCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCC 23425 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 |||| || ||||| | ||||| || || || || | ||||| || || | |||| Sbjct 23426 ACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGA 23485 Query 127761 -GTTCCTTC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTC 127818 || || | | ||| | || |||||||| | || ||||| || || || || Sbjct 23486 GGTAGCTGCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTC 23543 Query 127819 GCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCT 127877 | ||||| | | ||| || | ||| | ||||||| | || || ||| |||| Sbjct 23544 GGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCT 23602 Query 127878 GTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 127937 | ||||| || || | | ||||| ||||| ||||| || | |||| Sbjct 23603 GGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAA 23662 Query 127938 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 127994 | || |||||||| | ||||| | || || | || |||| || | ||||| | Sbjct 23663 AGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAAT 23722 Query 127995 CGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| |||||||| || ||||| | ||| || || ||||| Sbjct 23723 CGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762 >seq24 Length=157561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/272 (68%), Gaps = 14/272 (5%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||||| ||||| |||||||||||||| | ||| || ||| ||| | || | |||| Sbjct 125042 ACCGATAGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCG---ACCTTC 124986 Query 12935 A---AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 | || | |||| ||| | | ||| ||||| |||||||||||||| || | | Sbjct 124985 AGCGAACAAGTCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGA 124926 Query 12992 GGCG-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 || || | || ||| || ||| || || || || | || |||||| || | Sbjct 124925 TCCGCTCACGCT-GAAGAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAG 124867 Query 13051 TCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACT 13108 |||| || || |||||| || ||||||| |||||| || || ||| ||||||| || Sbjct 124866 TCTTTCCTGTTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCT 124807 Query 13109 TC-CAAAGTAGCGCTCGGGTTGTTTAAGAAAG 13139 || |||| | ||||||||| || || ||| Sbjct 124806 TCTCAAACT---TCTCGGGTTGCTTCAGGAAG 124778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495144583520