Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq246 210 3e-49 seq236 116 6e-21 >seq246 Length=51316 Score = 210 bits (232), Expect = 3e-49 Identities = 392/569 (69%), Gaps = 10/569 (2%) Strand=Plus/Plus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| ||||| |||||||| |||||| |||||||| |||||||||| ||||||||| | Sbjct 23235 CAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAA 23294 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | | || || ||||||| || ||| |||||||| || |||| ||||| |||||||| Sbjct 23295 GGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 23354 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095 || ||||| ||||| ||||| ||||| || || || | || |||| || | ||| | Sbjct 23355 GAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTT 23414 Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA-TGCACGGCATGCGCTCGA 160154 ||| ||| ||||| | ||||||| || |||||||| |||| |||| || ||| ||| | Sbjct 23415 GTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTT-GCGAATGCAAGGAATGGTCTCAA 23473 Query 160155 CGGCGTTAAACA---ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211 |||||| || | | ||| ||| ||| |||||||| || | || ||| Sbjct 23474 TGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC---TCCTTGATGTAGGTGTCGATGAGCA 23530 Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271 ||||| | || | ||| | || || || ||||| ||| |||||| || | Sbjct 23531 GGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAG 23590 Query 160272 CCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGT 160331 |||| | ||| ||||| |||| | | |||| || | || || | || | Sbjct 23591 CCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCAT 23650 Query 160332 CGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC 160391 | | ||| |||||||| |||| | |||||||||||| | ||||||| | || || | Sbjct 23651 CAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGC 23710 Query 160392 TCTT-TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCA 160450 || |||| | ||| || || | || || ||||| |||||| ||| |||| || Sbjct 23711 GGTTATTCCAATCGTG-CAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAG 23769 Query 160451 GCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || | || |||||||||| |||||| Sbjct 23770 GCTTCGGCCTTTTTGTACATTTGCCAGAT 23798 >seq236 Length=53426 Score = 116 bits (128), Expect = 6e-21 Identities = 347/530 (65%), Gaps = 4/530 (1%) Strand=Plus/Minus Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943 ||| ||||||||||||||||| || || || ||| || | ||||||| | | Sbjct 6899 CAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAAT 6840 Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003 |||| || |||| || |||||| |||||||| |||||| || || ||||||| Sbjct 6839 CTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGC 6780 Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 | ||||| || ||||| | || ||| ||| ||||||||||| || |||||| | Sbjct 6779 ACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTA 6720 Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCA 204122 | | || | | || || | | | | || |||| | |||||||| || || | Sbjct 6719 AAGTGCCTTGATATCTTCGGGGATGT-TGGGAATGTTCTGAATGGAGCCGTTCTCAGCAA 6661 Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182 | | | || || | | || ||| | ||| || ||| ||| | || Sbjct 6660 TGATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCC 6601 Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242 |||||||| | ||| || || |||| || || | ||| | | | |||| ||| Sbjct 6600 AGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGT 6541 Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302 | || ||||| ||||||||| || | |||||| | || ||||| || ||||| || | Sbjct 6540 AGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGG 6481 Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAG 204361 | ||||||| | ||||||| ||||| | | || | ||| | || || ||| ||| Sbjct 6480 CGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATC-TGCTCCTTGAGCGAGTCCCAC 6422 Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 || || || |||||| || ||||||||||||| || | |||||| Sbjct 6421 TCCCACAGGTCAGAGGGTTTGACATCCCACATGTCGAATTGGAGGATGCC 6372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795139575200320