Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq246 210 3e-49
seq236 116 6e-21
>seq246
Length=51316
Score = 210 bits (232), Expect = 3e-49
Identities = 392/569 (69%), Gaps = 10/569 (2%)
Strand=Plus/Plus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| ||||| |||||||| |||||| |||||||| |||||||||| ||||||||| |
Sbjct 23235 CAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAA 23294
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| | || || ||||||| || ||| |||||||| || |||| ||||| ||||||||
Sbjct 23295 GGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 23354
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGT 160095
|| ||||| ||||| ||||| ||||| || || || | || |||| || | ||| |
Sbjct 23355 GAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTT 23414
Query 160096 GTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA-TGCACGGCATGCGCTCGA 160154
||| ||| ||||| | ||||||| || |||||||| |||| |||| || ||| ||| |
Sbjct 23415 GTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTT-GCGAATGCAAGGAATGGTCTCAA 23473
Query 160155 CGGCGTTAAACA---ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211
|||||| || | | ||| ||| ||| |||||||| || | || |||
Sbjct 23474 TGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC---TCCTTGATGTAGGTGTCGATGAGCA 23530
Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271
||||| | || | ||| | || || || ||||| ||| |||||| || |
Sbjct 23531 GGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAG 23590
Query 160272 CCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGT 160331
|||| | ||| ||||| |||| | | |||| || | || || | || |
Sbjct 23591 CCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCAT 23650
Query 160332 CGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC 160391
| | ||| |||||||| |||| | |||||||||||| | ||||||| | || || |
Sbjct 23651 CAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGC 23710
Query 160392 TCTT-TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCA 160450
|| |||| | ||| || || | || || ||||| |||||| ||| |||| ||
Sbjct 23711 GGTTATTCCAATCGTG-CAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAG 23769
Query 160451 GCCTGAGCAGTTTTGTACATGGCCCAGAT 160479
|| | || |||||||||| ||||||
Sbjct 23770 GCTTCGGCCTTTTTGTACATTTGCCAGAT 23798
>seq236
Length=53426
Score = 116 bits (128), Expect = 6e-21
Identities = 347/530 (65%), Gaps = 4/530 (1%)
Strand=Plus/Minus
Query 203884 CAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG 203943
||| ||||||||||||||||| || || || ||| || | ||||||| | |
Sbjct 6899 CAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAAT 6840
Query 203944 TTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGG 204003
|||| || |||| || |||||| |||||||| |||||| || || |||||||
Sbjct 6839 CTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGC 6780
Query 204004 CGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063
| ||||| || ||||| | || ||| ||| ||||||||||| || |||||| |
Sbjct 6779 ACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTA 6720
Query 204064 CACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCA 204122
| | || | | || || | | | | || |||| | |||||||| || || |
Sbjct 6719 AAGTGCCTTGATATCTTCGGGGATGT-TGGGAATGTTCTGAATGGAGCCGTTCTCAGCAA 6661
Query 204123 TCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGT 204182
| | | || || | | || ||| | ||| || ||| ||| | ||
Sbjct 6660 TGATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCC 6601
Query 204183 GGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGA 204242
|||||||| | ||| || || |||| || || | ||| | | | |||| |||
Sbjct 6600 AGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGT 6541
Query 204243 ATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAG 204302
| || ||||| ||||||||| || | |||||| | || ||||| || ||||| || |
Sbjct 6540 AGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGG 6481
Query 204303 CCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGC-TTCAGAGAGGTCCAG 204361
| ||||||| | ||||||| ||||| | | || | ||| | || || ||| |||
Sbjct 6480 CGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATC-TGCTCCTTGAGCGAGTCCCAC 6422
Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411
|| || || |||||| || ||||||||||||| || | ||||||
Sbjct 6421 TCCCACAGGTCAGAGGGTTTGACATCCCACATGTCGAATTGGAGGATGCC 6372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795139575200320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |