Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq301 141 2e-28 seq330 136 9e-27 seq61 93.3 1e-13 seq23 86.0 1e-11 >seq301 Length=43884 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || |||||||| |||| ||||||||| | | ||| Sbjct 7514 CGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTT 7573 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || |||||||| | |||||||||||||| ||| || Sbjct 7574 CGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCC 7633 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 7634 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 7693 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| || || || ||||| || Sbjct 7694 GTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 7731 >seq330 Length=39978 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| | || ||| Sbjct 15490 CGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTT 15549 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || || ||||| || ||||| || |||||||||||||| ||| ||| ||| Sbjct 15550 CGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCT 15609 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| ||| || | | || || || | Sbjct 15610 TCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGG 15669 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 15670 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 15707 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || |||||| |||| ||||||||| ||| || Sbjct 14976 CGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 15035 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || ||||| ||||||||||| ||||| ||| || Sbjct 15036 CGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCC 15095 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| || || |||| |||||||| || ||| || ||||| Sbjct 15096 TCCTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAAT 15155 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 15156 GTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTG 15193 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||||||||| |||||||| |||| ||||||||| | | || | ||||| Sbjct 15213 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 15272 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||||||||| ||| || || || ||| Sbjct 15273 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 15332 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | || || || || | ||||| ||| Sbjct 15333 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 15392 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || || ||||| || || || Sbjct 15393 TTTCCAGTGAGGGTCTTGAC 15412 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | ||| || || |||||| |||| ||||||||| ||| || Sbjct 14748 CGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 14807 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || || ||||| | ||||||||||| ||| ||| || Sbjct 14808 CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCC 14867 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 14868 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGG 14927 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || ||||| || Sbjct 14928 GTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTG 14965 >seq61 Length=119690 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 199438 CTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAA 199497 || ||| |||| ||||||||| ||| || | |||||||||||||| || ||| | Sbjct 2949 CTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTGCTTACCAGCGTA 2890 Query 199498 GATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGA 199557 ||| | ||||||||||| || ||| || ||| ||||||||||| ||| ||| Sbjct 2889 GATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTT 2830 Query 199558 TTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 |||| |||||| | | ||| || | | ||||| ||||| || |||| || || || Sbjct 2829 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGTCTTGAC 2770 Query 199618 AAAAATTTG 199626 ||||| || Sbjct 2769 GAAAATCTG 2761 >seq23 Length=158060 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| || || |||| Sbjct 67394 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 67453 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| ||| || || ||||| ||||| ||| || | Sbjct 67454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 67513 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 67514 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 67573 Query 199620 AA 199621 || Sbjct 67574 AA 67575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178897855045324