Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq330 138 1e-27
seq301 131 2e-25
seq23 129 7e-25
seq61 86.0 7e-12
>seq330
Length=39978
Score = 138 bits (152), Expect = 1e-27
Identities = 173/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | ||| || | | ||||| |||| |||| ||| |||||||| ||||| |||||
Sbjct 14735 TTACTGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTA 14794
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||| | ||||| |||| || |||||||| || || || |||||||||||||||||
Sbjct 14795 GTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTC 14854
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538
| || | || |||||||||| ||||| ||||| ||| | | | |||||| |
Sbjct 14855 AGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAG 14913
Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||||||| || | ||||| || ||||| ||||| || || || || || |||||
Sbjct 14914 ATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || ||||| |||||||| |||||
Sbjct 15519 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 15578
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || ||||| ||| |||||| ||| | |
Sbjct 15579 AATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACTTCACATT 15638
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || ||| || || || || | |||||||| ||||| || || || || ||
Sbjct 15639 GTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 15698
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 15699 GAAGATTTGCAT 15710
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || || | ||| |||||||| ||||| ||||||||| | ||||| |||| ||
Sbjct 14988 ACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCA 15047
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || || || | |||||||| || | || | | ||||||||||
Sbjct 15048 AGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGA 15107
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||| | | | ||||| ||||| || |||| |||||||| |||
Sbjct 15108 ATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTG 15167
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| ||| || || ||||| |||||
Sbjct 15168 CCGGTCAACGTCTTGACGAAGATCTGCAT 15196
Score = 98.7 bits (108), Expect = 1e-15
Identities = 132/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || | || || |||||||| || |||||
Sbjct 15233 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 15292
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 15293 GATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 15351
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | || || || ||||| || | |||||||| || || || || || || |
Sbjct 15352 TGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGA 15411
Query 46581 C 46581
|
Sbjct 15412 C 15412
>seq301
Length=43884
Score = 131 bits (144), Expect = 2e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | ||| |||||| ||||| ||||||||||| ||||| || |
Sbjct 7520 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCA 7579
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||| || ||||| ||||| ||||||||||| | || | || |||||||
Sbjct 7580 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 7639
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| || ||||| || | |||||
Sbjct 7640 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 7699
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 7700 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 7739
>seq23
Length=158060
Score = 129 bits (142), Expect = 7e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| | || |||||||||||||| || || |
Sbjct 67394 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 67453
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 67454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 67513
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 67514 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 67573
Query 46584 A 46584
|
Sbjct 67574 A 67574
>seq61
Length=119690
Score = 86.0 bits (94), Expect = 7e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455
||| |||| ||| ||||| ||||||||| | ||| | ||| || |||||||| ||
Sbjct 2955 TGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTGCTTACC 2896
Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515
||| | ||||||||||||||||| | | | || ||| |||||| ||||| |||
Sbjct 2895 AGCGTAGATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTT 2836
Query 46516 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG 46574
|| ||| | | | |||||| |||||||| | | ||||| || ||||| || | |
Sbjct 2835 GA-CGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGG 2777
Query 46575 TTTTAACAAAGATTTGCAT 46593
| || || || || || ||
Sbjct 2776 TCTTGACGAAAATCTGTAT 2758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565227293065440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |