Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq246 237 2e-57
seq330 123 2e-23
seq301 114 1e-20
seq23 105 7e-18
seq61 93.3 4e-14
>seq246
Length=51316
Score = 237 bits (262), Expect = 2e-57
Identities = 559/830 (67%), Gaps = 27/830 (3%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | |||||| | ||| || || |||||||||
Sbjct 22972 TTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTG 23031
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
|| | |||||| ||| | |||| | || |||| ||||| | ||||| || |||
Sbjct 23032 GCAGACTTGTAGATCTTCTCGTTGCCTAG-AG--CGACAAGCAGACGATCGGCAACAAAC 23088
Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798
|| ||||| ||| ||| |||| | | || | || ||||| |||| || || ||
Sbjct 23089 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCAAGCAGGGCGCAGGGG-AGAGCC 23145
Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858
||||| | || ||||| || ||| || || |||| ||| || | | | ||
Sbjct 23146 TCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACGGATCACCTCC 23205
Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918
||| | || | | | || | || || ||| |||||||| |||| |||
Sbjct 23206 TTGCTAGCACGGTTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCC 23265
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
||||| | || ||||| |||||| || |||| || |||||||| || || || |||
Sbjct 23266 TCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTG 23325
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
||||| || |||| ||| || || ||||||| ||||||||||| || || ||
Sbjct 23326 AGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCA 23385
Query 133039 ACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096
|||||||||| | | || | | ||||| | |||| ||||| | ||||| ||||
Sbjct 23386 ACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG--ATCCACTTGATGGCCCAGTCGG 23443
Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156
|||| | | ||| || || || || |||||||| || | | || | | || |
Sbjct 23444 CCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAG--GTAGCTGCGCTGGCT 23501
Query 133157 AGGAACGC----ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212
| | | | ||||||||||||||| || || | || ||||| | |||||||
Sbjct 23502 --GTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCC 23559
Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272
|| ||| || |||||||| ||||| || |||||| | ||| || || |||
Sbjct 23560 ATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAG 23619
Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332
||||||||||| || |||||||| ||||| || |||||| || |||||||| | |||
Sbjct 23620 CGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGA 23679
Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC 133389
|||||| | ||||| || |||| ||| | ||| ||| || |||||||||
Sbjct 23680 GAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTTGGAC 23739
Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| || | ||| ||| ||||||| || || || ||||| |||||||||||
Sbjct 23740 AGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACAT 23789
>seq330
Length=39978
Score = 123 bits (136), Expect = 2e-23
Identities = 169/231 (73%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| || |||||| |||| || || | ||
Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| ||||| ||||| | |||||
Sbjct 14908 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 14850
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | || || || |||||||| |||| |||||| | | |||||||||
Sbjct 14849 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 14790
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| ||| || ||||| ||||| |||||| || | || ||||
Sbjct 14789 CATCCAGAAGGAGAGC-ACACTGCACTTGGTCCTGCGTCTGCGTGGTGGCC 14740
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 15710 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 15651
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| || || || || ||||| | |||||
Sbjct 15650 GATACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 15591
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| ||||| || || || || | || || || ||||||||||
Sbjct 15590 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 15531
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| || ||
Sbjct 15530 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 15496
Score = 102 bits (112), Expect = 8e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||| | || ||||| |||||||| | || || || | |
Sbjct 15196 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 15137
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | ||| ||| || | ||||| ||||| |||||| | || ||
Sbjct 15136 GACACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 15077
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| ||||| || |||| |||||| | | ||||||||||
Sbjct 15076 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGCGACTACAAC 15017
Query 38424 ATCCAAAAGGA 38434
||||| |||||
Sbjct 15016 ATCCAGAAGGA 15006
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 38251 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCG 38310
|| |||| || || ||||| || || ||||||||| |||| || ||| | | || | |
Sbjct 15417 TAGTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCA 15358
Query 38311 TGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369
| | |||| | || || |||| ||||| ||||| || || | ||||| |||||
Sbjct 15357 TCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGA 15299
Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429
|| || | ||| || || ||||| || || | || |||||| |||||||||||||||
Sbjct 15298 CTGATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAG 15239
Query 38430 AAGGA 38434
|||||
Sbjct 15238 AAGGA 15234
>seq301
Length=43884
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 7737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 7678
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | || || |||| ||||| ||||| |||||| | |||
Sbjct 7677 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 7618
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| | || | ||| || || |||||||| || | || || ||| |||||||
Sbjct 7617 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTAC 7558
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| ||||| | || || || |||| |||||
Sbjct 7557 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 7520
>seq23
Length=158060
Score = 105 bits (116), Expect = 7e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || |||||| |
Sbjct 67574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 67515
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 67514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 67455
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| ||||| || || | |||||||| ||||||||||||||| |||
Sbjct 67454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 67395
Query 38433 G 38433
|
Sbjct 67394 G 67394
>seq61
Length=119690
Score = 93.3 bits (102), Expect = 4e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|| || || ||||| || || |||| ||||| || |||||| || | || || | ||
Sbjct 2758 ATACAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCC 2817
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||||||||| |||| | | |||||
Sbjct 2818 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCA 2876
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || ||||| || || |||||||| ||| | |||| | | |||||||||
Sbjct 2877 GCAGCGCTTGATCTACGCTGGTAAGCAGCTGGAAGACAGTCACACCTTGAGCGACTACAA 2936
Query 38423 CATCCAAAAG 38432
|||||| |||
Sbjct 2937 CATCCAGAAG 2946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162971604480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |