Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq289 255 7e-63
seq151 136 5e-27
seq236 95.1 2e-14
>seq289
Length=45676
Score = 255 bits (282), Expect = 7e-63
Identities = 472/690 (68%), Gaps = 8/690 (1%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||||||||||||||| || || || || || | ||||| || ||||||||
Sbjct 27400 ATCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACC 27459
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| |||||| | | | || ||||| || ||||||||||| || || || ||||| ||
Sbjct 27460 CTCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGAC 27519
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
||| || | || ||||| || || ||||| ||||| || || || || || ||
Sbjct 27520 GTTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTAGGCTC 27579
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || ||||| || ||| || || ||||| | || || || || || || ||
Sbjct 27580 GTTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACG 27639
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| |||||||| ||||| || | ||| |||| |||| | | |||||
Sbjct 27640 CTGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAG 27699
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815
|| || || ||| | || ||| ||||| || | ||| || || ||||| || | |
Sbjct 27700 GTAGGACTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGT 27759
Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGG 7874
|| ||| | || || || || || || || | | ||| || | ||| | |
Sbjct 27760 GAAGGTCTTCTTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGT 27815
Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934
|| || ||| | | | | ||||| || | ||||||| ||| | |||||| |
Sbjct 27816 CGACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGGACCTCGGAGTCGGCAAACTTGC 27875
Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994
|||||| | ||||| || || || || ||||| | |||||||||||| |||||||
Sbjct 27876 GTCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCT 27935
Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054
| ||||| || ||||| ||||| || | || || || || ||| |||| |||||||
Sbjct 27936 TGGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCG 27992
Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114
|||| || || |||||||| || || || || ||||| | | ||| |||||||
Sbjct 27993 TTCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGC 28052
Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGA 8144
|||| ||||| || || | || |||||||
Sbjct 28053 ACGAGTACGTAGTACCCAGGTCGATACCGA 28082
>seq151
Length=77715
Score = 136 bits (150), Expect = 5e-27
Identities = 361/545 (66%), Gaps = 15/545 (3%)
Strand=Plus/Plus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| |||||||| |||| | ||| || | || ||| | | ||
Sbjct 59527 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCCTCGAAGAGAGAG 59586
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | ||| || ||||| || ||||| || |
Sbjct 59587 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 59644
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418
| || || | | || |||||||| |||| | | || || ||||| || |
Sbjct 59645 CAGTGCGGAGTCTTCGGAGGGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 59701
Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
| | ||||| | | |||| || || || | | || || || | |||||||||
Sbjct 59702 GAGTGAACTCCTTCTTGCAGTGGTCCAACAGGT-TGGTGTCAAAGTCCTGGCCACCCAAG 59760
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || ||||| || ||||| |||| ||| || | ||||| | || ||
Sbjct 59761 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGCAGGGAG 59820
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597
||||| || ||||||||||| || || | || || ||||| || | ||| | ||
Sbjct 59821 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTA 59880
Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
| | |||||||| |||||||| || || || || || || || ||||| || |
Sbjct 59881 CCAGCACCCAGACCGTAGGCGATAGCAGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 59940
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| ||||||||||| | | ||||| || || || || || || ||||| ||||||
Sbjct 59941 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 60000
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| ||||| || | ||| || | | || ||||| ||||| | | || || || ||
Sbjct 60001 GCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 60060
Query 7775 TTCAT 7779
|||||
Sbjct 60061 TTCAT 60065
>seq236
Length=53426
Score = 95.1 bits (104), Expect = 2e-14
Identities = 335/521 (64%), Gaps = 13/521 (2%)
Strand=Plus/Minus
Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618
||||| || |||||||| | ||| |||||||| | || || | ||| ||| |
Sbjct 5707 TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGG 5648
Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678
||||||| | || || ||| || | || || || || | | |||||||||||
Sbjct 5647 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAA 5588
Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732
|| || | |||| |||| | || | ||||| || | || | ||||||
Sbjct 5587 GGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATAT 5531
Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792
|| || || ||| | ||||| | ||| ||||||||||| | || || || || ||
Sbjct 5530 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTG 5471
Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852
||| ||| | || | ||||| | || |||| || || ||||| ||||||
Sbjct 5470 CCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCC 5411
Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912
||| || ||||| || | || || || ||||| ||||| ||||| |||
Sbjct 5410 ATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCC 5351
Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972
|| | | | || ||| || || |||| || | | || ||||| || ||||||||
Sbjct 5350 TTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGG 5291
Query 105973 GTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACGT 106030
|| || | |||||| |||| || ||| | || | | |||||| ||||||||
Sbjct 5290 GTGGGAGAGGCATGAGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGGACAC 5233
Query 106031 GATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071
| ||||| |||| ||| || |||| || || ||||||
Sbjct 5232 GCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATA 5192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635120319640480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |