Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq289 255 7e-63 seq151 136 5e-27 seq236 95.1 2e-14 >seq289 Length=45676 Score = 255 bits (282), Expect = 7e-63 Identities = 472/690 (68%), Gaps = 8/690 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||||||| || || || || || | ||||| || |||||||| Sbjct 27400 ATCGAAATCTTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACC 27459 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | | || ||||| || ||||||||||| || || || ||||| || Sbjct 27460 CTCCTCAATGGTCAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGAC 27519 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| || | || ||||| || || ||||| ||||| || || || || || || Sbjct 27520 GTTGCGCTCACCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCAGCGGTAGGCTC 27579 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 27580 GTTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACG 27639 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || | ||| |||| |||| | | ||||| Sbjct 27640 CTGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACGGTGGTTCCGAG 27699 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || || || ||| | || ||| ||||| || | ||| || || ||||| || | | Sbjct 27700 GTAGGACTCGGCGGTCTCACGCATCTTGGTCAGGATCATGGAGGAGATCTCCTCGGGGGT 27759 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGG 7874 || ||| | || || || || || || || | | ||| || | ||| | | Sbjct 27760 GAAGGTCTTCTTCTCGCCCTTGAACTCGACCTCGACGACGGGCTT----GGAGCCCTTGT 27815 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 || || ||| | | | | ||||| || | ||||||| ||| | |||||| | Sbjct 27816 CGACAATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGGACCTCGGAGTCGGCAAACTTGC 27875 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 |||||| | ||||| || || || || ||||| | |||||||||||| ||||||| Sbjct 27876 GTCCGATCAATCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCT 27935 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | ||||| || ||||| ||||| || | || || || || ||| |||| ||||||| Sbjct 27936 TGGCCGCATCACCGATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAAGGGGTCG 27992 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 |||| || || |||||||| || || || || ||||| | | ||| ||||||| Sbjct 27993 TTCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGC 28052 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGA 8144 |||| ||||| || || | || ||||||| Sbjct 28053 ACGAGTACGTAGTACCCAGGTCGATACCGA 28082 >seq151 Length=77715 Score = 136 bits (150), Expect = 5e-27 Identities = 361/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | ||| || | || ||| | | || Sbjct 59527 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCCTCGAAGAGAGAG 59586 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| |||||||| | || || || | ||| || ||||| || ||||| || | Sbjct 59587 TCAATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 59644 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | || |||||||| |||| | | || || ||||| || | Sbjct 59645 CAGTGCGGAGTCTTCGGAGGGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGCTCTTGC 59701 Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | ||||| | | |||| || || || | | || || || | ||||||||| Sbjct 59702 GAGTGAACTCCTTCTTGCAGTGGTCCAACAGGT-TGGTGTCAAAGTCCTGGCCACCCAAG 59760 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| |||| ||| || | ||||| | || || Sbjct 59761 TGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGCAGGGAG 59820 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || ||||||||||| || || | || || ||||| || | ||| | || Sbjct 59821 ACATCGAAAGTACCACCACCAAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTA 59880 Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| |||||||| || || || || || || || ||||| || | Sbjct 59881 CCAGCACCCAGACCGTAGGCGATAGCAGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 59940 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | ||||| || || || || || || ||||| |||||| Sbjct 59941 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 60000 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | || ||||| ||||| | | || || || || Sbjct 60001 GCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGTCTCAGCAATCTCC 60060 Query 7775 TTCAT 7779 ||||| Sbjct 60061 TTCAT 60065 >seq236 Length=53426 Score = 95.1 bits (104), Expect = 2e-14 Identities = 335/521 (64%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || |||||||| | ||| |||||||| | || || | ||| ||| | Sbjct 5707 TCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGG 5648 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||||||| | || || ||| || | || || || || | | ||||||||||| Sbjct 5647 ACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAA 5588 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | |||| |||| | || | ||||| || | || | |||||| Sbjct 5587 GGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATAT 5531 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 || || || ||| | ||||| | ||| ||||||||||| | || || || || || Sbjct 5530 CTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTG 5471 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 ||| ||| | || | ||||| | || |||| || || ||||| |||||| Sbjct 5470 CCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCC 5411 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| || ||||| || | || || || ||||| ||||| ||||| ||| Sbjct 5410 ATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCC 5351 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972 || | | | || ||| || || |||| || | | || ||||| || |||||||| Sbjct 5350 TTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGG 5291 Query 105973 GTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACGT 106030 || || | |||||| |||| || ||| | || | | |||||| |||||||| Sbjct 5290 GTGGGAGAGGCATGAGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGGACAC 5233 Query 106031 GATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 | ||||| |||| ||| || |||| || || |||||| Sbjct 5232 GCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATA 5192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120319640480