Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq236 253 3e-62 seq246 161 1e-34 seq24 100 4e-16 >seq236 Length=53426 Score = 253 bits (280), Expect = 3e-62 Identities = 1151/1790 (64%), Gaps = 71/1790 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || | | || ||| || || || ||||| ||| Sbjct 5178 CCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5237 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATC---CACGCAACACCAACCCTC 111728 ||||||||||| || ||||| | | | |||| || || || | || ||||| Sbjct 5238 CTGGAGACATACAACCTCATGTC---TAGCAAGTTCTTCACTCATGCCTCTCCCACCCTG 5294 Query 111729 TTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||||| ||||| || | |||| ||||| || ||| | | | | ||||| Sbjct 5295 TTCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGAC 5354 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 ||| ||| | || || || | |||||| | ||||||| || || ||| |||| Sbjct 5355 GATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCT 5414 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 ||||||||||| || || ||||| || | |||| | ||| ||| || || Sbjct 5415 GGTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACC 5474 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| || | ||||||||||| |||||||| || || ||| ||| || | ||| Sbjct 5475 AACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATAT 5534 Query 111969 GTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 112022 || |||| | ||| | |||| | || | || |||| || ||||| ||| Sbjct 5535 GTTGACCAGGGTGG---TAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGG 5591 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGC 112080 ||||| || || | ||||||||||| | || ||||| || | || |||| ||| Sbjct 5592 CACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGC 5651 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | | ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| Sbjct 5652 GCT--CGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGA 5709 Query 112141 AGA--GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGA-TGCC 112196 ||| ||| | ||| | ||| | || || || || || || || || | || ||| Sbjct 5710 AGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCTGACTGCT 5766 Query 112197 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC- 112255 | || |||||||| || || | || || |||||| || | || | | | || Sbjct 5767 AT-GGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTG-GTC-GCA 5823 Query 112256 -GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | | ||| | || | ||||| | | || || | | || |||||||||||| Sbjct 5824 AGACTATTCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGT 5882 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 | || | ||||| ||||| || ||||| |||| ||||| || || ||||| |||| Sbjct 5883 AACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGA 5942 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 ||| || ||||||||||| || || || | || | | ||||||| Sbjct 5943 ACCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTT 6002 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC- 112492 ||||| || ||| | || || | || ||||| ||||| ||| | | || ||| | Sbjct 6003 GCTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGAT-TACA-ACGAAGGCT 6060 Query 112493 -ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | ||| | | | || || || ||||| || || || ||||| |||| Sbjct 6061 GCTATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGGTTGTCCGCAACCTCAACAAGA 6120 Query 112552 TTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | |||||| || ||||| || || || || || |||||| | ||||| | Sbjct 6121 TCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATATGCGCCACCGAC 6180 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT 112670 | ||||| | |||||||| ||||| || || | ||| || | || ||| | ||| Sbjct 6181 CCATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTT 6239 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || || ||| || | | || || || |||||||| || || || || || Sbjct 6240 GAGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGCC 6299 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 |||||||| | |||| | || |||| || ||||| || ||| | || |||| || Sbjct 6300 CTTGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATCA 6359 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCAC-- 112847 || || || | || | || ||||| || ||||||| | || | ||| || | || Sbjct 6360 CCTGCATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAACC---CTCTGACCT 6415 Query 112848 -TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | || |||||| | |||||||| | ||||||||| | ||| || ||||| | | Sbjct 6416 GTGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCT 6475 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | || || |||||||| ||| || | || || ||||||| || || ||||| || Sbjct 6476 CCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGA 6535 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 |||||||| | |||||||| | | || | ||| || || ||||| | ||||||| Sbjct 6536 GCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAA 6595 Query 113027 ---CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 | || |||| | ||||| || | ||| ||||||||| | | |||||| | Sbjct 6596 CCCCTGGCTTCTC---AAGGACCTGGTCGACACTGGCCTCTGGTCCGATGCCATGAAGAA 6652 Query 113084 ---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAA 113139 | ||| || ||| | | || |||||||| || ||| | || || || || | Sbjct 6653 CCGTATCATTGCTGAGAAC----GGCTCCATTCAGAACATTCCCAACATCCCCGAAGATA 6708 Query 113140 TTAAGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGG 113196 | ||| | ||| || || ||||| || || | |||| | |||| Sbjct 6709 TCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATTGTC---CAGATGG 6765 Query 113197 CCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAG 113254 | || ||||||||| |||||||||| |||| ||| |||| | |||| | Sbjct 6766 CGGCTGATCGTGGTGCTTTCATTGATC--AGTCCCAGTCCCTGAACATCCACATGAAGGA 6823 Query 113255 TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 113314 ||| || ||| |||| | | |||||| | | |||||| |||||||| || Sbjct 6824 TCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGAC 6883 Query 113315 GGGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 113364 || ||||| ||||| || || |||| ||| || || ||||||| Sbjct 6884 CGGCATGTACTACCTGCGTACTCAGGCCGCGGCTGCTCCTATCCAGTTCA 6933 >seq246 Length=51316 Score = 161 bits (178), Expect = 1e-34 Identities = 357/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| | ||||| || |||||| || |||||||||| | | | ||| Sbjct 23762 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAAT 23703 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 23702 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 23643 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 23642 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 23584 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 ||||| | | || | |||| ||| | | | || ||||| ||| |||| Sbjct 23583 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 23525 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 102109 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 23524 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 23467 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||| || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 23466 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 23407 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 ||||||||| |||| || | || ||||| || ||||||||||||||| ||| Sbjct 23406 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTG 23348 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| | | || | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 23347 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 23288 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 23287 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 23245 >seq24 Length=157561 Score = 100 bits (110), Expect = 4e-16 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 || || || || |||||||||| |||||| ||| ||| | ||| | | | || | Sbjct 125035 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCTTCAGCGAACAAG 124976 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || | ||||| | ||||||||||||||||||||||| || | | || || Sbjct 124975 TCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGATCCGCTCACG 124916 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || | ||| || || ||| || || ||| | || ||||||||||||||| || || Sbjct 124915 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 124857 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 16300 ||||| || ||||| | ||||||||| ||||||||||| || |||| |||| | Sbjct 124856 TCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT- 124798 Query 16301 TCTCTCAGGTTGCTTAAGAAA 16321 |||| |||||||| || || Sbjct 124797 --TCTCGGGTTGCTTCAGGAA 124779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730202411840