Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq236 232 8e-56
seq24 116 4e-21
seq139 87.8 2e-12
seq246 82.4 9e-11
>seq236
Length=53426
Score = 232 bits (256), Expect = 8e-56
Identities = 1031/1607 (64%), Gaps = 67/1607 (4%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559
||||| ||||| |||||||| ||||| |||||||||||||||||| | | |||
Sbjct 6809 GTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGG-----ACA 6755
Query 109560 CTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614
||| | ||| ||| |||||||| |||||||| | ||||||||| ||||| |||
Sbjct 6754 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATG 6695
Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCA-CCATGA---GATCCTTCATCTCTTT 109670
| ||||| ||||| ||||| | ||| | |||| | | |||||| | |
Sbjct 6694 TTGGGAATGTTCTGAATGGAGCC----GTTCTCAGCAATGATACGGTTCTTCATGGCATC 6639
Query 109671 CGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTC 109730
|||||||| || | || || | | ||| |||||| || || ||
Sbjct 6638 GGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTC 6579
Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790
|| ||||| ||||| |||||||||| | |||||||| ||||| ||||| |||||
Sbjct 6578 GCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTT 6519
Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850
|| || || || | || || || ||||| || || | ||| | ||||| ||
Sbjct 6518 ACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGT 6459
Query 109851 ACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA-- 109908
||| | | ||| | | |||| | | |||||| || |||| | | |
Sbjct 6458 ACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTC-------CCAC--AGGTCAGA 6408
Query 109909 --GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGA 109966
|| | | |||||||||| || ||| || | ||||| | ||||| || |||||||
Sbjct 6407 GGGTTTGA-CATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGA 6349
Query 109967 AACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGAT 110026
| ||||| | ||||| |||| ||| | ||| |||||||| || |||||||| |
Sbjct 6348 ATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGT 6289
Query 110027 ACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC 110086
| || |||||||| || || |||| | |||| ||| | | || ||||| |
Sbjct 6288 AGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAAGGGCA-TG 6230
Query 110087 CACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTC 110145
| || | || || | || || |||||||| ||||| | |||||||| || || |
Sbjct 6229 CGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGC 6170
Query 110146 ATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGA 110205
|| || | || || | || ||||| |||| || |||| | |||||
Sbjct 6169 ATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGG 6110
Query 110206 TTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT---CGTAATCGAACGTTTTCGTC 110262
|| || ||| |||| |||||| || || | || || | | | ||||
Sbjct 6109 TTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCA-GCCTTCG-- 6053
Query 110263 TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322
| | || |||||| ||||| || | ||| || | ||||| |||| | ||| |||
Sbjct 6052 TTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCT 5993
Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382
| ||| || | ||| || || || | |||||| || ||| |||| ||||
Sbjct 5992 GGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTC 5933
Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442
||||| || ||| |||||| |||||||| ||||||||| | ||| ||||||| ||
Sbjct 5932 TTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCG 5873
Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCG 110499
||||| | | || |||| | ||| | | || | ||| | | || ||||| | |
Sbjct 5872 GTCTGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGAATAGTCTTGCG--ACCA 5816
Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559
| || ||| |||||| || ||||| |||| || |||| || || ||||
Sbjct 5815 CGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCC 5756
Query 110560 AGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTC 110616
|| || || || || ||| || | ||| | ||| |||| || |||||| | |
Sbjct 5755 AG-GCCAGGGCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGC 5699
Query 110617 TTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCA 110676
|||||||| || || |||||||| | || ||| | ||| || || |||||||
Sbjct 5698 TTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCC 5639
Query 110677 TCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGA 110736
| || ||||| ||| || || | || || | || || | |||||| || |||||
Sbjct 5638 TTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGG 5579
Query 110737 TAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTG 110790
|||| || | || || | |||| ||| |||||| |||||| | || |||
Sbjct 5578 TAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTG 5522
Query 110791 GCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATT 110850
|||||||| | ||||| |||||||| || | || ||| || || || |||
Sbjct 5521 TTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATG 5462
Query 110851 CTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTA 110910
|| ||||||| ||| |||| | || || |||||||| ||| ||| |
Sbjct 5461 TAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAA 5402
Query 110911 ATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGC 110969
|| ||||| ||| | || || |||| ||||| || || ||| |||| || |
Sbjct 5401 ATCATGGCACATGTCT-TCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTC 5343
Query 110970 AATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGT 111029
| | ||||| || |||| ||| | | || || || || ||||| || || || |
Sbjct 5342 GACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGA 5283
Query 111030 CGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074
|||||| ||| ||| |||| ||||| ||||||||| || ||
Sbjct 5282 GGCATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 5238
>seq24
Length=157561
Score = 116 bits (128), Expect = 4e-21
Identities = 336/506 (66%), Gaps = 22/506 (4%)
Strand=Plus/Minus
Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564
|||||| || || || || | || || | || || |||||| |||| || ||| ||||
Sbjct 125219 ATCGAAGCGGCCAGGTCGCATCAGTGCCTTGTCTAGTATATCGGCACGATTGGTACCGGC 125160
Query 11565 AATGACTACAATGCCAGT-CTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| ||| || | || || ||| ||| ||| ||||||||||| || |||| |||||||
Sbjct 125159 CAAGACGACGA--CCTGTTCTCTCGTGTTGAATCCGTCCATTTCCGTAAGAATCTGGTTG 125102
Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT------- 11675
| || |||||||| |||||| | | |||| |||| | | | |
Sbjct 125101 AGTGTAGCCTCACGCTCGTCGTTGCCGCCGAATCCACG-GCCGCTCTCCTGTCGAGCACG 125043
Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735
||||| |||||| || || || ||||| | ||| || ||| || || | | |
Sbjct 125042 ACCGATAGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCTTCAGC 124983
Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793
||| | || | ||||| | || ||||| || |||||||| ||||| | | |
Sbjct 124982 GAACAAGTCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGATCC 124923
Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853
|| | | ||||| ||| || || |||||| ||||| | || ||||| ||||||
Sbjct 124922 GCTCA-CGCTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTC 124865
Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911
|| || || || |||| || ||||||| ||| || || || ||||||||||| ||||
Sbjct 124864 TTTCCTGTTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTC 124805
Query 11912 -CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970
|||| | ||| || | ||| |||||| |||| |||| || || ||||||
Sbjct 124804 TCAAACT---TCTCGGGTTGCTTCAGGAAGCTAACAAACTCCATAATCTCAGTCTTGGCT 124748
Query 11971 GAGTCGATACCCTCAACATCGGTGAA 11996
|| | ||| |||||||| ||||
Sbjct 124747 TCCTCCAGACCAGCAACATCGCTGAA 124722
>seq139
Length=80053
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735
||||| |||||| | || |||||||| | ||| ||| ||||| ||| |
Sbjct 40651 ACCGATAGCGTCGAGTTCGTCGATGAAGATAATAGCCGGGGATTTGGCTTTGGCCGCCGC 40710
Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795
||| || || || |||||||| ||||| ||||| || || || ||| |||| || || |
Sbjct 40711 GAATAGCTCTCGAACACGCTTGGCTCCGACACCAACAAAGATTTCATCGAA-TTCGCTAC 40769
Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
||| | | ||| |||||| | ||| ||||| | ||||||||||| || ||||
Sbjct 40770 CAGACATGTAGAAGAATGGAACACCGGCCTCTCCAGCAACAGCTCGAGCGAGCAGCGTCT 40829
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
| || |||||||| | ||| |||| || | || ||| | ||| |||||
Sbjct 40830 TTCCAGTACCAGGGGGGCCAACGAGGAGAACACCTTTGGGCAACTTAGCACC 40881
>seq246
Length=51316
Score = 82.4 bits (90), Expect = 9e-11
Identities = 143/205 (70%), Gaps = 5/205 (2%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| || ||| || ||
Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| || ||||||||
Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670
||||| || || || || | || |||| || ||||| ||| |||||| ||
Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGC-AAAGGAAGAGTTCTTGTCCTGGA 23422
Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695
|||||||| ||||||| ||||||
Sbjct 23423 TCCACTTGATGGCCCAGTCGGCCTT 23447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588964426621600
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