Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq236 232 8e-56 seq24 116 4e-21 seq139 87.8 2e-12 seq246 82.4 9e-11 >seq236 Length=53426 Score = 232 bits (256), Expect = 8e-56 Identities = 1031/1607 (64%), Gaps = 67/1607 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| |||||||||||||||||| | | ||| Sbjct 6809 GTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGG-----ACA 6755 Query 109560 CTTTTG-GCT----AATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 ||| | ||| ||| |||||||| |||||||| | ||||||||| ||||| ||| Sbjct 6754 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATG 6695 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTTCA-CCATGA---GATCCTTCATCTCTTT 109670 | ||||| ||||| ||||| | ||| | |||| | | |||||| | | Sbjct 6694 TTGGGAATGTTCTGAATGGAGCC----GTTCTCAGCAATGATACGGTTCTTCATGGCATC 6639 Query 109671 CGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTC 109730 |||||||| || | || || | | ||| |||||| || || || Sbjct 6638 GGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTC 6579 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 || ||||| ||||| |||||||||| | |||||||| ||||| ||||| ||||| Sbjct 6578 GCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTT 6519 Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 || || || || | || || || ||||| || || | ||| | ||||| || Sbjct 6518 ACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGT 6459 Query 109851 ACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA-- 109908 ||| | | ||| | | |||| | | |||||| || |||| | | | Sbjct 6458 ACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTC-------CCAC--AGGTCAGA 6408 Query 109909 --GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGA 109966 || | | |||||||||| || ||| || | ||||| | ||||| || ||||||| Sbjct 6407 GGGTTTGA-CATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGA 6349 Query 109967 AACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGAT 110026 | ||||| | ||||| |||| ||| | ||| |||||||| || |||||||| | Sbjct 6348 ATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGT 6289 Query 110027 ACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC 110086 | || |||||||| || || |||| | |||| ||| | | || ||||| | Sbjct 6288 AGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAAGGGCA-TG 6230 Query 110087 CACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTC 110145 | || | || || | || || |||||||| ||||| | |||||||| || || | Sbjct 6229 CGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGC 6170 Query 110146 ATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGA 110205 || || | || || | || ||||| |||| || |||| | ||||| Sbjct 6169 ATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGG 6110 Query 110206 TTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGT---CGTAATCGAACGTTTTCGTC 110262 || || ||| |||| |||||| || || | || || | | | |||| Sbjct 6109 TTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCA-GCCTTCG-- 6053 Query 110263 TCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCT 110322 | | || |||||| ||||| || | ||| || | ||||| |||| | ||| ||| Sbjct 6052 TTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCT 5993 Query 110323 TTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTC 110382 | ||| || | ||| || || || | |||||| || ||| |||| |||| Sbjct 5992 GGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTC 5933 Query 110383 TTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCC 110442 ||||| || ||| |||||| |||||||| ||||||||| | ||| ||||||| || Sbjct 5932 TTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCG 5873 Query 110443 GTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCG 110499 ||||| | | || |||| | ||| | | || | ||| | | || ||||| | | Sbjct 5872 GTCTGGGCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGAATAGTCTTGCG--ACCA 5816 Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 | || ||| |||||| || ||||| |||| || |||| || || |||| Sbjct 5815 CGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCC 5756 Query 110560 AGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCA--CCCTCCTCAACCCTC 110616 || || || || || ||| || | ||| | ||| |||| || |||||| | | Sbjct 5755 AG-GCCAGGGCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGC 5699 Query 110617 TTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCA 110676 |||||||| || || |||||||| | || ||| | ||| || || ||||||| Sbjct 5698 TTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCC 5639 Query 110677 TCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGA 110736 | || ||||| ||| || || | || || | || || | |||||| || ||||| Sbjct 5638 TTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGG 5579 Query 110737 TAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTG 110790 |||| || | || || | |||| ||| |||||| |||||| | || ||| Sbjct 5578 TAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTG 5522 Query 110791 GCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATT 110850 |||||||| | ||||| |||||||| || | || ||| || || || ||| Sbjct 5521 TTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATG 5462 Query 110851 CTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTA 110910 || ||||||| ||| |||| | || || |||||||| ||| ||| | Sbjct 5461 TAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAA 5402 Query 110911 ATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGC 110969 || ||||| ||| | || || |||| ||||| || || ||| |||| || | Sbjct 5401 ATCATGGCACATGTCT-TCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTC 5343 Query 110970 AATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGT 111029 | | ||||| || |||| ||| | | || || || || ||||| || || || | Sbjct 5342 GACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGA 5283 Query 111030 CGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAG 111074 |||||| ||| ||| |||| ||||| ||||||||| || || Sbjct 5282 GGCATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 5238 >seq24 Length=157561 Score = 116 bits (128), Expect = 4e-21 Identities = 336/506 (66%), Gaps = 22/506 (4%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| || || || || | || || | || || |||||| |||| || ||| |||| Sbjct 125219 ATCGAAGCGGCCAGGTCGCATCAGTGCCTTGTCTAGTATATCGGCACGATTGGTACCGGC 125160 Query 11565 AATGACTACAATGCCAGT-CTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | ||| || | || || ||| ||| ||| ||||||||||| || |||| ||||||| Sbjct 125159 CAAGACGACGA--CCTGTTCTCTCGTGTTGAATCCGTCCATTTCCGTAAGAATCTGGTTG 125102 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTT------- 11675 | || |||||||| |||||| | | |||| |||| | | | | Sbjct 125101 AGTGTAGCCTCACGCTCGTCGTTGCCGCCGAATCCACG-GCCGCTCTCCTGTCGAGCACG 125043 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||||| |||||| || || || ||||| | ||| || ||| || || | | | Sbjct 125042 ACCGATAGCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCTTCAGC 124983 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793 ||| | || | ||||| | || ||||| || |||||||| ||||| | | | Sbjct 124982 GAACAAGTCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGATCC 124923 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || | | ||||| ||| || || |||||| ||||| | || ||||| |||||| Sbjct 124922 GCTCA-CGCTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTC 124865 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911 || || || || |||| || ||||||| ||| || || || ||||||||||| |||| Sbjct 124864 TTTCCTGTTCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTC 124805 Query 11912 -CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 |||| | ||| || | ||| |||||| |||| |||| || || |||||| Sbjct 124804 TCAAACT---TCTCGGGTTGCTTCAGGAAGCTAACAAACTCCATAATCTCAGTCTTGGCT 124748 Query 11971 GAGTCGATACCCTCAACATCGGTGAA 11996 || | ||| |||||||| |||| Sbjct 124747 TCCTCCAGACCAGCAACATCGCTGAA 124722 >seq139 Length=80053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||||| |||||| | || |||||||| | ||| ||| ||||| ||| | Sbjct 40651 ACCGATAGCGTCGAGTTCGTCGATGAAGATAATAGCCGGGGATTTGGCTTTGGCCGCCGC 40710 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || |||||||| ||||| ||||| || || || ||| |||| || || | Sbjct 40711 GAATAGCTCTCGAACACGCTTGGCTCCGACACCAACAAAGATTTCATCGAA-TTCGCTAC 40769 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 ||| | | ||| |||||| | ||| ||||| | ||||||||||| || |||| Sbjct 40770 CAGACATGTAGAAGAATGGAACACCGGCCTCTCCAGCAACAGCTCGAGCGAGCAGCGTCT 40829 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | || |||||||| | ||| |||| || | || ||| | ||| ||||| Sbjct 40830 TTCCAGTACCAGGGGGGCCAACGAGGAGAACACCTTTGGGCAACTTAGCACC 40881 >seq246 Length=51316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| || ||| || || Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||||| ||| || |||||||| Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| || || || || | || |||| || ||||| ||| |||||| || Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGC-AAAGGAAGAGTTCTTGTCCTGGA 23422 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 |||||||| ||||||| |||||| Sbjct 23423 TCCACTTGATGGCCCAGTCGGCCTT 23447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964426621600