Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq236 268 1e-66 seq246 116 4e-21 seq24 86.0 7e-12 >seq236 Length=53426 Score = 268 bits (296), Expect = 1e-66 Identities = 937/1439 (65%), Gaps = 43/1439 (3%) Strand=Plus/Minus Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954 |||||||| | ||||| || || ||| | || | | |||||||| | |||||||| Sbjct 6596 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 6537 Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014 || ||||| || || ||||||| || || | || ||| |||||||| || || | Sbjct 6536 CTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 6477 Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074 | | ||||| || ||| | |||||||| | |||||||| ||||| || | Sbjct 6476 GAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCA 6417 Query 106075 --GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGA 106132 | | || ||||| || | ||||||| || ||||| || | || | ||| | || Sbjct 6416 CAGGTCAGAG-GGTTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGT 6359 Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAG 106191 || |||| |||| || |||| ||| | | | || | || | || ||||| || Sbjct 6358 GATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCAAG 6300 Query 106192 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 106251 || || || || ||||| |||||||| | |||| || || || || || Sbjct 6299 GGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTC 6240 Query 106252 AAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 ||| |||| || |||| | || | || || ||||| || ||||| | ||| Sbjct 6239 AAAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCA 6185 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 106366 || |||| ||| |||||||| || || || || || || || || ||| Sbjct 6184 ATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCA 6125 Query 106367 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 106426 |||| ||| || || | ||| | ||| |||| ||||||||| || | | | ||| Sbjct 6124 ATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCA 6065 Query 106427 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 106486 | || | | || |||||| || ||||| | || ||||| ||||||||| Sbjct 6064 TAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACA 6005 Query 106487 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATC 106546 || |||||| | | |||||| | ||| || || || | |||||| || || Sbjct 6004 GCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATG 5945 Query 106547 GTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 106606 || |||| ||||| ||||| ||||| |||||| |||||||||||||||||| |||| Sbjct 5944 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGG 5885 Query 106607 GTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCG-GCTGGTACAA 106664 | || ||||| ||||| | | || || | | ||||| | || | | || || Sbjct 5884 TTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAATAGTC 5825 Query 106665 TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 106724 | ||| | ||||||||| |||||| || || | || || |||||||| || | Sbjct 5824 TTGCGAC--CACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCC-A 5768 Query 106725 CCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTC 106782 || ||| | || || || || || || || || | || | ||| | ||| || Sbjct 5767 TAGCAGTCAGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTC 5711 Query 106783 --CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACA 106839 |||||| ||||||||||| || || |||||||| || | | | || || || | | Sbjct 5710 TTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCGCGAGC 5652 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 || ||||||| | || ||||| || | ||||||||||| | || || ||||| Sbjct 5651 GCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTG 5592 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953 ||| ||||| || |||| || | | || ||||| ||| | || | || Sbjct 5591 CCAAGGCTCGAGGTAGATGGCAAAGGCACCAG---GACGCTTGTTACCACCCTGGTCAAC 5535 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 ||| | || ||| ||| || || |||||||| ||||||||||| | || ||| || Sbjct 5534 ATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTT 5475 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || ||| ||| |||| | | ||||| || || || ||||| || Sbjct 5474 GGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACC 5415 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 |||| ||| || || ||||| | | ||||| |||||||||| | ||| || Sbjct 5414 AGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATC 5355 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| || ||| | |||||| ||||| ||| | | || ||||| || ||||| Sbjct 5354 GTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAA 5295 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTTGTCGTATGTCTCCAAG 107251 ||||| || | || ||| |||| | |||| ||||| || ||||||||||| | Sbjct 5294 CAGGGTGGGAGAGGCATGAGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGG 5237 Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 ||| |||||||| || || |||||| | | ||| ||||||| ||||| ||||| Sbjct 5236 ACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178 >seq246 Length=51316 Score = 116 bits (128), Expect = 4e-21 Identities = 348/526 (66%), Gaps = 17/526 (3%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| |||||||| || || || || || || || || ||| || || Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 |||||| || ||||| |||| ||||||| ||| ||||| ||| || |||| Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA---AGAGTTCTTGTCCTG 23420 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509 | ||| || || ||||| | |||||||| ||| || || | || | ||||| | Sbjct 23421 GATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 23480 Query 117510 AAATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 117567 || | | ||| | | | | || ||||| ||||| |||| || | || || Sbjct 23481 GAAGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 23538 Query 117568 GTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCT 117626 || ||| || | | | ||| ||| | || | ||||||| | || || ||| Sbjct 23539 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGG 23597 Query 117627 TATCTGCACTTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACC 117685 ||||| || || |||| || | | | ||||| ||||| ||||| || Sbjct 23598 GATCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGG 23656 Query 117686 CAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCT 117742 | |||||||| |||||||||| ||||| | ||| || | ||||||| || | | Sbjct 23657 CGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTAT 23716 Query 117743 TCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 |||| |||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 23717 TCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762 >seq24 Length=157561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 9450 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATGAAGGGGACATT 9508 ||||||||||||||||||||||| || | | || || || | ||| || || Sbjct 124957 CCCACACCAACAAACATCTCCACGAACTCAGATCCGCTCACGCTGAA-GAAAGGCACGCC 124899 Query 9509 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9568 ||| || || ||| | || ||||||||||||||| || || ||||| || ||||| Sbjct 124898 AGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGTTCCTGGTGGGCCGGCGAG 124839 Query 9569 GAGGGCACCCCGTGGAATCTTGGCGCC--ACTTC-CAAAGTATCTCTCAGGTTGCTTGAG 9625 | |||||| || ||||||||||| || |||| |||| | |||| |||||||| || Sbjct 124838 AATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT---TCTCGGGTTGCTTCAG 124782 Query 9626 AAA 9628 || Sbjct 124781 GAA 124779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969206877280