Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq236 268 1e-66
seq246 116 4e-21
seq24 86.0 7e-12
>seq236
Length=53426
Score = 268 bits (296), Expect = 1e-66
Identities = 937/1439 (65%), Gaps = 43/1439 (3%)
Strand=Plus/Minus
Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954
|||||||| | ||||| || || ||| | || | | |||||||| | ||||||||
Sbjct 6596 GTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 6537
Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014
|| ||||| || || ||||||| || || | || ||| |||||||| || || |
Sbjct 6536 CTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 6477
Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074
| | ||||| || ||| | |||||||| | |||||||| ||||| || |
Sbjct 6476 GAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCA 6417
Query 106075 --GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGA 106132
| | || ||||| || | ||||||| || ||||| || | || | ||| | ||
Sbjct 6416 CAGGTCAGAG-GGTTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGT 6359
Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCAG 106191
|| |||| |||| || |||| ||| | | | || | || | || ||||| ||
Sbjct 6358 GATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCAAG 6300
Query 106192 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 106251
|| || || || ||||| |||||||| | |||| || || || || ||
Sbjct 6299 GGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTC 6240
Query 106252 AAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306
||| |||| || |||| | || | || || ||||| || ||||| | |||
Sbjct 6239 AAAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCA 6185
Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 106366
|| |||| ||| |||||||| || || || || || || || || |||
Sbjct 6184 ATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCA 6125
Query 106367 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 106426
|||| ||| || || | ||| | ||| |||| ||||||||| || | | | |||
Sbjct 6124 ATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCA 6065
Query 106427 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 106486
| || | | || |||||| || ||||| | || ||||| |||||||||
Sbjct 6064 TAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACA 6005
Query 106487 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATC 106546
|| |||||| | | |||||| | ||| || || || | |||||| || ||
Sbjct 6004 GCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATG 5945
Query 106547 GTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 106606
|| |||| ||||| ||||| ||||| |||||| |||||||||||||||||| ||||
Sbjct 5944 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGG 5885
Query 106607 GTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCG-GCTGGTACAA 106664
| || ||||| ||||| | | || || | | ||||| | || | | || ||
Sbjct 5884 TTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAATAGTC 5825
Query 106665 TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 106724
| ||| | ||||||||| |||||| || || | || || |||||||| || |
Sbjct 5824 TTGCGAC--CACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCC-A 5768
Query 106725 CCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTC 106782
|| ||| | || || || || || || || || | || | ||| | ||| ||
Sbjct 5767 TAGCAGTCAGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAAGTTC 5711
Query 106783 --CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGATCTCTACA 106839
|||||| ||||||||||| || || |||||||| || | | | || || || | |
Sbjct 5710 TTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCGCGAGC 5652
Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899
|| ||||||| | || ||||| || | ||||||||||| | || || |||||
Sbjct 5651 GCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTG 5592
Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953
||| ||||| || |||| || | | || ||||| ||| | || | ||
Sbjct 5591 CCAAGGCTCGAGGTAGATGGCAAAGGCACCAG---GACGCTTGTTACCACCCTGGTCAAC 5535
Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013
||| | || ||| ||| || || |||||||| ||||||||||| | || ||| ||
Sbjct 5534 ATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTT 5475
Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073
|| || ||| ||| |||| | | ||||| || || || ||||| ||
Sbjct 5474 GGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACC 5415
Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133
|||| ||| || || ||||| | | ||||| |||||||||| | ||| ||
Sbjct 5414 AGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATC 5355
Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193
||||| || ||| | |||||| ||||| ||| | | || ||||| || |||||
Sbjct 5354 GTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAA 5295
Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTTGTCGTATGTCTCCAAG 107251
||||| || | || ||| |||| | |||| ||||| || ||||||||||| |
Sbjct 5294 CAGGGTGGGAGAGGCATGAGTGAAGAA--CTTGCTAGACATGAGGTTGTATGTCTCCAGG 5237
Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310
||| |||||||| || || |||||| | | ||| ||||||| ||||| |||||
Sbjct 5236 ACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178
>seq246
Length=51316
Score = 116 bits (128), Expect = 4e-21
Identities = 348/526 (66%), Gaps = 17/526 (3%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || ||| |||||||| || || || || || || || || ||| || ||
Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||||||||| |||||||| | ||| | || | | || | ||| |||||||||
Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449
|||||| || ||||| |||| ||||||| ||| ||||| ||| || ||||
Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA---AGAGTTCTTGTCCTG 23420
Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTC 117509
| ||| || || ||||| | |||||||| ||| || || | || | ||||| |
Sbjct 23421 GATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTT 23480
Query 117510 AAATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATAT 117567
|| | | ||| | | | | || ||||| ||||| |||| || | || ||
Sbjct 23481 GAAGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAG 23538
Query 117568 GTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCT 117626
|| ||| || | | | ||| ||| | || | ||||||| | || || |||
Sbjct 23539 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGG 23597
Query 117627 TATCTGCACTTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACC 117685
||||| || || |||| || | | | ||||| ||||| ||||| ||
Sbjct 23598 GATCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGG 23656
Query 117686 CAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCT 117742
| |||||||| |||||||||| ||||| | ||| || | ||||||| || | |
Sbjct 23657 CGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTAT 23716
Query 117743 TCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788
|||| |||| ||||| ||||||| ||||| ||||| || |||||
Sbjct 23717 TCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762
>seq24
Length=157561
Score = 86.0 bits (94), Expect = 7e-12
Identities = 132/183 (72%), Gaps = 8/183 (4%)
Strand=Plus/Minus
Query 9450 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATGAAGGGGACATT 9508
||||||||||||||||||||||| || | | || || || | ||| || ||
Sbjct 124957 CCCACACCAACAAACATCTCCACGAACTCAGATCCGCTCACGCTGAA-GAAAGGCACGCC 124899
Query 9509 AGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAG 9568
||| || || ||| | || ||||||||||||||| || || ||||| || |||||
Sbjct 124898 AGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGTTCCTGGTGGGCCGGCGAG 124839
Query 9569 GAGGGCACCCCGTGGAATCTTGGCGCC--ACTTC-CAAAGTATCTCTCAGGTTGCTTGAG 9625
| |||||| || ||||||||||| || |||| |||| | |||| |||||||| ||
Sbjct 124838 AATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT---TCTCGGGTTGCTTCAG 124782
Query 9626 AAA 9628
||
Sbjct 124781 GAA 124779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589969206877280
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