Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq330 95.1 8e-15
seq23 89.7 3e-13
seq301 86.0 4e-12
>seq330
Length=39978
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831
|||||||| | |||||| || ||||| ||||| ||||| | |||| | || | || ||
Sbjct 14760 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCTTC 14818
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| || || ||||| || | || |||||||| | || | |||||||||||
Sbjct 14819 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 14878
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| |||||| | || | || | || || |||| ||| || || ||
Sbjct 14879 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 14938
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || |||||||| || || |||||||||
Sbjct 14939 GCCGGTCAGAGTCTTGACGAAAATCTGCATA 14969
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| |||| |||| || ||||| || || || ||
Sbjct 15234 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAG 15293
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 15294 ATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 15353
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
| || | ||| | ||| || |||| ||| ||||| ||||| ||||| ||||| ||
Sbjct 15354 TCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 15412
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/210 (70%), Gaps = 10/210 (5%)
Strand=Plus/Plus
Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCT 34836
||||| |||||| || ||||| ||||| ||||| | |||| | || | || || ||||
Sbjct 14993 GTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCCTCAAGCT 15051
Query 34837 GTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCT 34896
| || || ||||| || || || ||||| || | || | ||||||||||| |||||
Sbjct 15052 GCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCT 15111
Query 34897 TCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
| |||||| || | ||||| || | ||||| || | || ||||| ||
Sbjct 15112 TTGATTTGAC--AT--TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTG 15167
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || | ||||| || ||||||||||||
Sbjct 15168 CCGGTCAACGTCTTGACGAAGATCTGCATA 15197
>seq23
Length=158060
Score = 89.7 bits (98), Expect = 3e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| ||
Sbjct 67396 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 67455
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| ||| |||||||| | || | ||||||||||| ||||| ||||| |
Sbjct 67456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 67515
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || || | ||| ||||| || ||||| || |||||||| ||
Sbjct 67516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 67574
>seq301
Length=43884
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/198 (70%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || || |||| |||| |||||||| || || || ||
Sbjct 7544 TCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 7603
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||| |||||||| | || | ||||||||||| ||||| ||||| ||
Sbjct 7604 ATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 7661
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||| || || | ||| || || || |||||||| |||||
Sbjct 7662 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 7719
Query 34967 CACAAAGATCTGCATATT 34984
|| || |||||||| ||
Sbjct 7720 GACGAAAATCTGCATCTT 7737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324627380426016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |