Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq330 95.1 8e-15 seq23 89.7 3e-13 seq301 86.0 4e-12 >seq330 Length=39978 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | |||||| || ||||| ||||| ||||| | |||| | || | || || Sbjct 14760 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCTTC 14818 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || | || |||||||| | || | ||||||||||| Sbjct 14819 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 14878 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | || | || | || || |||| ||| || || || Sbjct 14879 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 14938 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||| || || ||||||||| Sbjct 14939 GCCGGTCAGAGTCTTGACGAAAATCTGCATA 14969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| |||| |||| || ||||| || || || || Sbjct 15234 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAG 15293 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| |||||| Sbjct 15294 ATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 15353 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || |||| ||| ||||| ||||| ||||| ||||| || Sbjct 15354 TCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 15412 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/210 (70%), Gaps = 10/210 (5%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCT 34836 ||||| |||||| || ||||| ||||| ||||| | |||| | || | || || |||| Sbjct 14993 GTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG-TGCGACCGTCCTCAAGCT 15051 Query 34837 GTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCT 34896 | || || ||||| || || || ||||| || | || | ||||||||||| ||||| Sbjct 15052 GCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCT 15111 Query 34897 TCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 | |||||| || | ||||| || | ||||| || | || ||||| || Sbjct 15112 TTGATTTGAC--AT--TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTG 15167 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||||| || |||||||||||| Sbjct 15168 CCGGTCAACGTCTTGACGAAGATCTGCATA 15197 >seq23 Length=158060 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| | || |||| || ||||| || || ||||| || Sbjct 67396 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 67455 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | ||| |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 67456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 67515 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 67516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 67574 >seq301 Length=43884 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/198 (70%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || |||| |||| |||||||| || || || || Sbjct 7544 TCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 7603 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 7604 ATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 7661 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || || | ||| || || || |||||||| ||||| Sbjct 7662 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTT 7719 Query 34967 CACAAAGATCTGCATATT 34984 || || |||||||| || Sbjct 7720 GACGAAAATCTGCATCTT 7737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627380426016