Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq236 89.7 6e-13
>seq236
Length=53426
Score = 89.7 bits (98), Expect = 6e-13
Identities = 297/460 (65%), Gaps = 4/460 (1%)
Strand=Plus/Minus
Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164
|||||||| ||| || ||| || || || ||||| | | | | ||||| |||
Sbjct 5803 TCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCAT 5744
Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224
|| || || ||||| | | ||| ||| | || | || | |||| || | |||
Sbjct 5743 TCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCG 5684
Query 48225 GGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT 48284
|| ||||| ||||| | || || || | || | | ||||| ||||| ||| |
Sbjct 5683 GGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTG 5624
Query 48285 TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACA 48344
|| ||||| || || | | || || ||||| || || | || || || | ||
Sbjct 5623 CGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCA 5564
Query 48345 CCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAAC 48404
|| || || || ||||| || || || | |||||||||||| ||||| | |||| | |
Sbjct 5563 CCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGC 5504
Query 48405 ATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTT 48464
|| || | |||||| || || |||| ||||| || | ||| ||| || | || |
Sbjct 5503 ATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGG 5444
Query 48465 ATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT 48522
|| | | || || || |||||||| ||||| || || || | ||||| |
Sbjct 5443 ATGCGATGGACGTTCAA--GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCT 5386
Query 48523 TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562
| || || ||||| || || || || ||||| || ||||
Sbjct 5385 TCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCAT 5346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562097754562080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |