Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq236 89.7 6e-13 >seq236 Length=53426 Score = 89.7 bits (98), Expect = 6e-13 Identities = 297/460 (65%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164 |||||||| ||| || ||| || || || ||||| | | | | ||||| ||| Sbjct 5803 TCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCAT 5744 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224 || || || ||||| | | ||| ||| | || | || | |||| || | ||| Sbjct 5743 TCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCG 5684 Query 48225 GGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT 48284 || ||||| ||||| | || || || | || | | ||||| ||||| ||| | Sbjct 5683 GGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTG 5624 Query 48285 TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACA 48344 || ||||| || || | | || || ||||| || || | || || || | || Sbjct 5623 CGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCA 5564 Query 48345 CCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAAC 48404 || || || || ||||| || || || | |||||||||||| ||||| | |||| | | Sbjct 5563 CCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGC 5504 Query 48405 ATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTT 48464 || || | |||||| || || |||| ||||| || | ||| ||| || | || | Sbjct 5503 ATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGG 5444 Query 48465 ATATTACTAA--TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT 48522 || | | || || || |||||||| ||||| || || || | ||||| | Sbjct 5443 ATGCGATGGACGTTCAA--GCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCT 5386 Query 48523 TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 | || || ||||| || || || || ||||| || |||| Sbjct 5385 TCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCAT 5346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562097754562080