Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq363 111 1e-19
>seq363
Length=36312
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
||| || || | ||||| | ||| ||||| ||||| || | || | ||| || | |||
Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429
Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885
|||||| |||||||||| | |||| | ||| || | || || ||||||||
Sbjct 13430 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 13489
Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945
| ||||| ||||| || | |||||||||||||| ||||| | ||||| ||||||||
Sbjct 13490 GAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 13549
Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969
| |||| |||||| ||||| ||
Sbjct 13550 GCAGGACCGCTGGTATAGCTGGCA 13573
Score = 91.5 bits (100), Expect = 1e-13
Identities = 228/344 (66%), Gaps = 2/344 (1%)
Strand=Plus/Plus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
||||||| || || || |||||| |||||| |||||||| |||| | ||| |
Sbjct 13669 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCATGCGCTGAGGATCA 13728
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127
| | || ||| | |||||||| | | || | | | | |||||| || || |
Sbjct 13729 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATGATCTCTGCCAGCTGGTCGACGC 13788
Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187
|| | || | |||||| ||| | ||| |||||| || || || |||| ||||||||
Sbjct 13789 CCTTGCCGGCGTAGTCCGCCTTTGCATCCACGTACTCGGCGCCAAAGTGCCGCCACTGGA 13848
Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247
| ||||| || || |||||||| || | || | ||| | ||| |||| | |
Sbjct 13849 AGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCGAGGA 13908
Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307
| || | ||| || ||| ||||||||||||| || || ||| ||| | | ||
Sbjct 13909 ACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGATAGAAG 13968
Query 30308 TTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30350
|||| ||||| || |||||| || ||||| | | ||||||
Sbjct 13969 ATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGC 14011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408609771397556
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |