Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq363 111 1e-19 >seq363 Length=36312 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||| || || | ||||| | ||| ||||| ||||| || | || | ||| || | ||| Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 |||||| |||||||||| | |||| | ||| || | || || |||||||| Sbjct 13430 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 13489 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 | ||||| ||||| || | |||||||||||||| ||||| | ||||| |||||||| Sbjct 13490 GAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 13549 Query 29946 CCCCGACCTCTGGTAGAGCTGACA 29969 | |||| |||||| ||||| || Sbjct 13550 GCAGGACCGCTGGTATAGCTGGCA 13573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/344 (66%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || || || |||||| |||||| |||||||| |||| | ||| | Sbjct 13669 TGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCATGCGCTGAGGATCA 13728 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 | | || ||| | |||||||| | | || | | | | |||||| || || | Sbjct 13729 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATGATCTCTGCCAGCTGGTCGACGC 13788 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 || | || | |||||| ||| | ||| |||||| || || || |||| |||||||| Sbjct 13789 CCTTGCCGGCGTAGTCCGCCTTTGCATCCACGTACTCGGCGCCAAAGTGCCGCCACTGGA 13848 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247 | ||||| || || |||||||| || | || | ||| | ||| |||| | | Sbjct 13849 AGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGTCGAGGA 13908 Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307 | || | ||| || ||| ||||||||||||| || || ||| ||| | | || Sbjct 13909 ACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGATAGAAG 13968 Query 30308 TTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30350 |||| ||||| || |||||| || ||||| | | |||||| Sbjct 13969 ATGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGC 14011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609771397556