Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq301 107 1e-18
seq330 100 2e-16
>seq301
Length=43884
Score = 107 bits (118), Expect = 1e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||| || || || ||| || || || ||||| || || ||| ||||
Sbjct 7517 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGG 7576
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||||||||| || || |||| |||||| || |||| ||||| |||||||
Sbjct 7577 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 7636
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||||||||| | ||
Sbjct 7637 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 7696
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||||| || ||||| | || || || |||||||||||| ||
Sbjct 7697 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 7738
>seq330
Length=39978
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| || || || ||||| || | | ||| |||| || | ||||
Sbjct 14994 TGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGC 15053
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| || || ||||| ||||||| ||||| ||||||||||| |||||||
Sbjct 15054 TTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTT 15113
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | ||||| | || ||||||| || || || || || |||
Sbjct 15114 GATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 15173
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || ||||||||
Sbjct 15174 AACGTCTTGACGAAGATCTGCAT 15196
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| || || |||||||| || || || ||||| || | | |||
Sbjct 14751 AGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 14810
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| ||||||||| ||||| |||| ||||| || || | |||| |||||||
Sbjct 14811 CCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCC 14870
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || || | | | || || | |||||||| | ||
Sbjct 14871 TTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTG 14930
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| ||| || || |||||||||||
Sbjct 14931 ATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380930301711756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |