Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq236 383 3e-101 seq246 181 2e-40 >seq236 Length=53426 Score = 383 bits (424), Expect = 3e-101 Identities = 1238/1885 (66%), Gaps = 94/1885 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||| || |||| || || || ||||||||||||||||| Sbjct 6937 ACAGTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTG 6878 Query 212613 AGGCC---CTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| ||| | |||||| |||| | | ||| | ||| Sbjct 6877 AGACCAAGCTT---CCAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATT 6830 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 ||| ||||| || || | |||||||||||| ||| || ||||| | | Sbjct 6829 GTGGG-ATCCTT------CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACC 6777 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||||| ||||| | | || | | ||| || | |||||| ||||||||| | | Sbjct 6776 ACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAG 6717 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | | |||| || || |||| | ||| |||||||| | || || | | ||| | Sbjct 6716 TGCCTTGATATCTTCGGGGATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGAT 6657 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | ||| ||||||||| || ||||| ||||| || Sbjct 6656 ACGGTTCTT---CATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCA 6600 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| || || | || || | | |||||| | ||| |||||||| Sbjct 6599 GGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTA 6540 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||||| || ||||||||| ||||||||||| | || ||||| || ||||| || || Sbjct 6539 GGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGC 6480 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 | || | ||||| | | |||||||| ||| | | ||| |||| Sbjct 6479 GAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCG------AGTC 6426 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| || ||| |||||| | || || | ||||||||| || || | |||||| | Sbjct 6425 CCA-CTCCCA--CAGGTCAGAGGGTTTGACATCCCACATGTCGAATTGGAGGATGCCCTC 6369 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | | || |||| | | || |||||| || | | ||||||| | ||| || Sbjct 6368 GGATGCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGA 6309 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 |||| ||||| || | ||||||||| ||||| |||| | |||| |||| ||||| Sbjct 6308 AGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTC 6249 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| |||||||| || | |||| | || || || |||||||| || | Sbjct 6248 GGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAAC 6189 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385 ||| ||||||| ||| | || || ||| | ||||| | ||||| |||| Sbjct 6188 GCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGAC 6129 Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 || ||||||||||||||||||||| |||| |||||||| | || | || Sbjct 6128 ATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCT---- 6073 Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 | || | |||| || || | ||| | |||| ||||| | ||||| Sbjct 6072 --TAAAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAA 6015 Query 213500 GTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 ||||||||| || ||||| ||| ||| | |||||| || ||||||||||| |||||| Sbjct 6014 GTTGCAAACAGCAACCTCATCTG-GAG-CACAGTACTCGATAATCTCGGTGCAGAGGTTG 5957 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTGTA 213616 || |||||||| |||||||||| ||||| ||| ||| | |||| ||||||||| Sbjct 5956 GAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGGCATCCTTGTA 5898 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 ||||||| ||||| || ||||| ||||| |||| || ||| || | | | Sbjct 5897 GAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTC-T 5839 Query 213677 GGCCTTGACCACCCGCCTGACAGC-TCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735 | | || | | ||| | ||| | | |||||| | || || | | | Sbjct 5838 GAGCGCGAATAGTCTTGCGACCACGTCCCTCCCT---CTCGTATTTCTCATACAAAGCCT 5782 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGAG 213790 ||| || | ||| || | ||| || || || |||| || || || |||||||| Sbjct 5781 CGAACTCCTCGCCATAG---CAGTC-AG-CCAGGCCAGGGCATTCGTTGGGGCACATGAG 5727 Query 213791 GCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849 |||||||| || | |||| || | || |||||| || || || | ||| || || Sbjct 5726 CGTCCAGTCCAAGTTCTTCTCA-ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAA 5668 Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909 ||||| ||| | | | ||| ||| || ||| ||||| ||||| || || | Sbjct 5667 GGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACT 5608 Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---C 213966 |||||| ||| |||||||| ||||| | ||||||||||||||| || || | |||| | Sbjct 5607 CAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTAC 5548 Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGT 214026 | |||||||| || ||||| ||||||||| || || | ||| | | |||| Sbjct 5547 CACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGT 5488 Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA-- 214084 | || |||||||| || || || || ||||||| ||| | || ||| ||||| Sbjct 5487 TAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGC-GATGGACG 5432 Query 214085 --GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142 | || || ||||| || |||||| |||||||| || | ||| ||| || | Sbjct 5431 TTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAG 5372 Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202 || || | ||||| || || | | || | ||||||||| || |||| |||| || Sbjct 5371 ATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCTTG 5313 Query 214203 -GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261 | | || | |||||| || ||||| |||||| | | |||||| |||| | ||| Sbjct 5312 CGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAG 5253 Query 214262 CCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCA 214320 |||| ||||||||||| ||||||| ||| | || ||| | || Sbjct 5252 GTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAG-ACACTCGCA 5194 Query 214321 TCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGC 214377 | | |||||||||||||| || | || || | | ||| || ||||| || | Sbjct 5193 TAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAG---CTTCAGAAGGTATGAAC 5137 Query 214378 GCTCCAGAGTCTTGAACCCAAAGTA 214402 |||||||||||||||| || ||||| Sbjct 5136 GCTCCAGAGTCTTGAAGCCGAAGTA 5112 >seq246 Length=51316 Score = 181 bits (200), Expect = 2e-40 Identities = 552/846 (65%), Gaps = 18/846 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | || |||||||| Sbjct 22953 CTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTC 23012 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| |||||||||| | || || | | | || ||| | | |||| Sbjct 23013 CATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCT-TCTCGTTGCCTAGAGCGACAAGCA 23071 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| || || |||| ||||| | ||| ||| || ||||||||| | |||| Sbjct 23072 GACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGG 23131 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| || | ||||||| ||| || | || || || | || | Sbjct 23132 CGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGT 23191 Query 48078 ----GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 | | | | | || | |||| ||| ||||| | | |||| |||| Sbjct 23192 CACGGATCACCTCCTTGCTAGCACGGTTC-TTG---AGGTGAGAG---TGCAGCAGGCAG 23244 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| || ||||| || ||||||| ||||||| ||| |||||| Sbjct 23245 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 23304 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || | || || | || ||||||||| Sbjct 23305 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 23364 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || || || || || | || | || |||| ||||||||| |||| Sbjct 23365 CCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATC 23424 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || | |||||||| |||||||| ||||| || || ||||| ||||| |||| Sbjct 23425 CACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAG 23484 Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 || | ||| || | ||| | ||||| || ||| | ||| |||| Sbjct 23485 AGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCG 23544 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || ||||||||| ||||||||| | ||||| | ||| Sbjct 23545 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGG 23604 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | ||| | ||| ||||| ||||| || ||||| || || |||||| Sbjct 23605 ACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAG 23664 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCCAGCC 48609 ||||| |||| || | ||| | ||||| | | || || |||||| | Sbjct 23665 AAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAG-GCGGTTATTCCAATC 23723 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || | || ||| ||| || | ||||| | ||||||||||| || || ||||| Sbjct 23724 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTT 23783 Query 48670 GTACAT 48675 |||||| Sbjct 23784 GTACAT 23789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931514495380480