Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq236 383 3e-101
seq246 181 2e-40
>seq236
Length=53426
Score = 383 bits (424), Expect = 3e-101
Identities = 1238/1885 (66%), Gaps = 94/1885 (5%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| || ||||| | ||| |||| || |||| || || || |||||||||||||||||
Sbjct 6937 ACAGTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTG 6878
Query 212613 AGGCC---CTTGCCCCAGCC-GTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668
|| || ||| |||||| ||| | |||||| |||| | | ||| | |||
Sbjct 6877 AGACCAAGCTT---CCAGCCAGTGAA-GTGCAT-GCTGGTAAT--CTTGCCC-----ATT 6830
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
||| ||||| || || | |||||||||||| ||| || ||||| | |
Sbjct 6829 GTGGG-ATCCTT------CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACC 6777
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| ||||| ||||| | | || | | ||| || | |||||| ||||||||| | |
Sbjct 6776 ACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAG 6717
Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845
| | |||| || || |||| | ||| |||||||| | || || | | ||| |
Sbjct 6716 TGCCTTGATATCTTCGGGGATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGAT 6657
Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905
| | | |||| | ||| ||||||||| || ||||| ||||| ||
Sbjct 6656 ACGGTTCTT---CATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCA 6600
Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965
|||||||| | |||||| || || | || || | | |||||| | ||| ||||||||
Sbjct 6599 GGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTA 6540
Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025
|||||||| || ||||||||| ||||||||||| | || ||||| || ||||| || ||
Sbjct 6539 GGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGC 6480
Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085
| || | ||||| | | |||||||| ||| | | ||| ||||
Sbjct 6479 GAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCG------AGTC 6426
Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145
||| || ||| |||||| | || || | ||||||||| || || | |||||| |
Sbjct 6425 CCA-CTCCCA--CAGGTCAGAGGGTTTGACATCCCACATGTCGAATTGGAGGATGCCCTC 6369
Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205
| | || |||| | | || |||||| || | | ||||||| | ||| ||
Sbjct 6368 GGATGCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGA 6309
Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265
|||| ||||| || | ||||||||| ||||| |||| | |||| |||| |||||
Sbjct 6308 AGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTC 6249
Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325
|| ||| |||||||| || | |||| | || || || |||||||| || |
Sbjct 6248 GGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAAC 6189
Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385
||| ||||||| ||| | || || ||| | ||||| | ||||| ||||
Sbjct 6188 GCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGAC 6129
Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445
|| ||||||||||||||||||||| |||| |||||||| | || | ||
Sbjct 6128 ATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCT---- 6073
Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499
| || | |||| || || | ||| | |||| ||||| | |||||
Sbjct 6072 --TAAAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAA 6015
Query 213500 GTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557
||||||||| || ||||| ||| ||| | |||||| || ||||||||||| ||||||
Sbjct 6014 GTTGCAAACAGCAACCTCATCTG-GAG-CACAGTACTCGATAATCTCGGTGCAGAGGTTG 5957
Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA-ATCCTTGTA 213616
|| |||||||| |||||||||| ||||| ||| ||| | |||| |||||||||
Sbjct 5956 GAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGGCATCCTTGTA 5898
Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676
||||||| ||||| || ||||| ||||| |||| || ||| || | | |
Sbjct 5897 GAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTC-T 5839
Query 213677 GGCCTTGACCACCCGCCTGACAGC-TCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGT 213735
| | || | | ||| | ||| | | |||||| | || || | | |
Sbjct 5838 GAGCGCGAATAGTCTTGCGACCACGTCCCTCCCT---CTCGTATTTCTCATACAAAGCCT 5782
Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG--ATGCG---GGACACATGAG 213790
||| || | ||| || | ||| || || || |||| || || || ||||||||
Sbjct 5781 CGAACTCCTCGCCATAG---CAGTC-AG-CCAGGCCAGGGCATTCGTTGGGGCACATGAG 5727
Query 213791 GCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849
|||||||| || | |||| || | || |||||| || || || | ||| || ||
Sbjct 5726 CGTCCAGTCCAAGTTCTTCTCA-ACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAA 5668
Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909
||||| ||| | | | ||| ||| || ||| ||||| ||||| || || |
Sbjct 5667 GGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACT 5608
Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---C 213966
|||||| ||| |||||||| ||||| | ||||||||||||||| || || | |||| |
Sbjct 5607 CAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTAC 5548
Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGT 214026
| |||||||| || ||||| ||||||||| || || | ||| | | ||||
Sbjct 5547 CACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGT 5488
Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA-- 214084
| || |||||||| || || || || ||||||| ||| | || ||| |||||
Sbjct 5487 TAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGC-GATGGACG 5432
Query 214085 --GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATG 214142
| || || ||||| || |||||| |||||||| || | ||| ||| || |
Sbjct 5431 TTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAG 5372
Query 214143 ATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG 214202
|| || | ||||| || || | | || | ||||||||| || |||| |||| ||
Sbjct 5371 ATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCTTG 5313
Query 214203 -GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAG 214261
| | || | |||||| || ||||| |||||| | | |||||| |||| | |||
Sbjct 5312 CGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAG 5253
Query 214262 CCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCA 214320
|||| ||||||||||| ||||||| ||| | || ||| | ||
Sbjct 5252 GTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAG-ACACTCGCA 5194
Query 214321 TCAGCATGTGCTGGGGCCTCT---CTATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGC 214377
| | |||||||||||||| || | || || | | ||| || ||||| || |
Sbjct 5193 TAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAG---CTTCAGAAGGTATGAAC 5137
Query 214378 GCTCCAGAGTCTTGAACCCAAAGTA 214402
|||||||||||||||| || |||||
Sbjct 5136 GCTCCAGAGTCTTGAAGCCGAAGTA 5112
>seq246
Length=51316
Score = 181 bits (200), Expect = 2e-40
Identities = 552/846 (65%), Gaps = 18/846 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | ||||| |||||||| ||||| || | | || ||||||||
Sbjct 22953 CTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTC 23012
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
||||||| |||||||||| | || || | | | || ||| | | ||||
Sbjct 23013 CATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCT-TCTCGTTGCCTAGAGCGACAAGCA 23071
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| |||| || || |||| ||||| | ||| ||| || ||||||||| | ||||
Sbjct 23072 GACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGG 23131
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
||| | ||||| || | ||||||| ||| || | || || || | || |
Sbjct 23132 CGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGT 23191
Query 48078 ----GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133
| | | | | || | |||| ||| ||||| | | |||| ||||
Sbjct 23192 CACGGATCACCTCCTTGCTAGCACGGTTC-TTG---AGGTGAGAG---TGCAGCAGGCAG 23244
Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193
|||||||| |||||| || ||||| || ||||||| ||||||| ||| ||||||
Sbjct 23245 GCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCA 23304
Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253
||||||| || | || ||||||||||| || | || || | || |||||||||
Sbjct 23305 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 23364
Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313
||||| || || || || || || | || | || |||| ||||||||| ||||
Sbjct 23365 CCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATC 23424
Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373
|| | |||||||| |||||||| ||||| || || ||||| ||||| ||||
Sbjct 23425 CACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAG 23484
Query 48374 AGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433
|| | ||| || | ||| | ||||| || ||| | ||| ||||
Sbjct 23485 AGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCG 23544
Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493
||||| | ||||| || ||||||||| ||||||||| | ||||| | |||
Sbjct 23545 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGG 23604
Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553
|| || | ||| | ||| | ||| ||||| ||||| || ||||| || || ||||||
Sbjct 23605 ACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAG 23664
Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC----ATTCCAGCC 48609
||||| |||| || | ||| | ||||| | | || || |||||| |
Sbjct 23665 AAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAG-GCGGTTATTCCAATC 23723
Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669
|| | || ||| ||| || | ||||| | ||||||||||| || || |||||
Sbjct 23724 GTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTT 23783
Query 48670 GTACAT 48675
||||||
Sbjct 23784 GTACAT 23789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931514495380480
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