Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq236 268 2e-66 seq246 262 7e-65 >seq236 Length=53426 Score = 268 bits (296), Expect = 2e-66 Identities = 846/1275 (66%), Gaps = 47/1275 (4%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| || ||||||||||||||||||||| |||||| || || | ||||||||||| Sbjct 6301 AGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTGACGAGCCTCGGGAGA 6243 Query 221479 AGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||||| ||||| || ||||| ||||||| || ||||| || || | || Sbjct 6242 CTCAAAGGGCATGCGCAGGGCAAG-GAAAG-CGTCGGCAAGACCCTGGACACCAACGCCA 6185 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | | | ||| | |||| | || |||| || || || |||||| | Sbjct 6184 ATGGGTCGGTGGCGCATATTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGGTTGACAT 6127 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653 | || | ||||||||||| | ||| |||||||| ||| | |||| || | Sbjct 6126 CAATGATCTTGTTGAGGTTGCG------GAC---AACCACCTTGGTGA-CTTCATGAAGC 6077 Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 || || || | || ||| |||| | || ||| |||| ||||| | Sbjct 6076 TTCTTAAAGTCA--TAGCAGCCTTCGTTGTAA---TCGACATAAGCAGGGAGGGCCAAAG 6022 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAG 221770 ||||| ||| || || || ||||| || | | | |||| || ||||| || ||| Sbjct 6021 AGGCCAAGTTGCAAACAGCAACCTCATC-TGGAGCACAGTACTCGATAATCTCGGTGCAG 5963 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 |||||| || |||||| ||||||| || || || |||||| ||| || ||| Sbjct 5962 AGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCC 5903 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| ||||| |||||||| ||| || |||| || | ||| || Sbjct 5902 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGC 5843 Query 221891 TCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGA 221948 | |||| |||| | ||| | ||| | ||||| ||| | | | | || | | Sbjct 5842 T-TCTGAGCGCGAATAGTCTTGC-GACCACGTCCCTCCCTCTCGTATTTCTCA-TACAAA 5786 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| || || || || ||||||| || || | ||| ||||| | Sbjct 5785 GCCT--CGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATGA 5728 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||||| | ||| | | || | || ||||||||| || || ||||| || || Sbjct 5727 GCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAA 5668 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || | || | | || ||| ||| ||||| ||| || | ||||| | |||| Sbjct 5667 GGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACT 5608 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | ||| |||||||| ||||| || |||| ||| | || || || |||||||| | Sbjct 5607 CAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTAC 5548 Query 222189 CACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 ||||||| || || || ||| ||| | |||||||| ||||| | || | | || Sbjct 5547 CACCCTGGTCAAC-ATA-TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACC 5490 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||| || |||||||||||| |||||| | ||| ||| | | | | | | Sbjct 5489 GTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTT 5430 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 || |||||||||||| || || || |||||||| || |||| |||||||| ||| Sbjct 5429 CAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGAT 5370 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426 ||||| || || ||||| | || | || || || || |||| ||| | || | Sbjct 5369 ACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGG 5310 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 || || ||||| ||||| |||||| ||| || || ||| | |||||||| || | Sbjct 5309 GGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGTT 5250 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCATGT 222545 ||| ||||| | ||| | | |||| ||| ||| || | | | | || ||| Sbjct 5249 GTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACAC-TCGCATAA 5191 Query 222546 ACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTC 222603 ||||| |||||||| ||| ||| || | |||| ||| ||||| || || Sbjct 5190 TCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGA--AGGTATGAACGCTC 5133 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663 |||||||||||| || ||||| | | || ||||||| ||| || | ||||| ||| Sbjct 5132 CAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGAGTC 5073 Query 222664 CAGCTCCGACTTGTG 222678 |||||| |||||| Sbjct 5072 GAGCTCCTCCTTGTG 5058 >seq246 Length=51316 Score = 262 bits (290), Expect = 7e-65 Identities = 574/856 (67%), Gaps = 22/856 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| || ||| ||||||||||||||||||||||||| Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| ||| | ||| || | |||||| || | || || Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGC-CTGAATGATGACGAGAAGTACTTCATCTC 23680 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||||||||| || || |||||||| ||| |||| | Sbjct 23679 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 23620 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 23619 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 23560 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || || ||| | || ||||| | || | Sbjct 23559 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 23500 Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | || | || | || || ||||| ||| ||| || |||| | |||||| Sbjct 23499 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCG 23441 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||||| ||||||||| | | ||| | || | |||| | |||| ||||| |||| Sbjct 23440 ACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCT 23381 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||||||| || ||||| ||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 23380 TTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGA 23321 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || ||| ||||||||||||||||||| | |||||||||| Sbjct 23320 AGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTC 23261 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT--CA 26069 | |||| || |||||||||||||| || | ||| ||| | || | | || || Sbjct 23260 TGCACACTGACTTTGCCTGCCTGCTGCACTC---TCAC---CTCAAGAACCGTGCTAGCA 23207 Query 26070 AGAGACCGTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 || || || | || ||||||| || ||||| || ||| ||||||| Sbjct 23206 AG-GA-GGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| || || |||| || |||||||| Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 23089 Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTA 26245 || ||| ||||| | |||||| | || || || | ||||| ||| ||| | Sbjct 23088 GTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCC-A 23030 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| || ||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 23029 ACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGC 22970 Query 26306 GGGTCGGCGACTATCA 26321 | |||| |||||| || Sbjct 22969 GCGTCGCCGACTACCA 22954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928826548199680