Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq236 268 2e-66
seq246 262 7e-65
>seq236
Length=53426
Score = 268 bits (296), Expect = 2e-66
Identities = 846/1275 (66%), Gaps = 47/1275 (4%)
Strand=Plus/Minus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
||||| || ||||||||||||||||||||| |||||| || || | |||||||||||
Sbjct 6301 AGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTGACGAGCCTCGGGAGA 6243
Query 221479 AGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|||||||| ||||| || ||||| ||||||| || ||||| || || | ||
Sbjct 6242 CTCAAAGGGCATGCGCAGGGCAAG-GAAAG-CGTCGGCAAGACCCTGGACACCAACGCCA 6185
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | ||| | | | ||| | |||| | || |||| || || || |||||| |
Sbjct 6184 ATGGGTCGGTGGCGCATATTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGGTTGACAT 6127
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653
| || | ||||||||||| | ||| |||||||| ||| | |||| || |
Sbjct 6126 CAATGATCTTGTTGAGGTTGCG------GAC---AACCACCTTGGTGA-CTTCATGAAGC 6077
Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
|| || || | || ||| |||| | || ||| |||| ||||| |
Sbjct 6076 TTCTTAAAGTCA--TAGCAGCCTTCGTTGTAA---TCGACATAAGCAGGGAGGGCCAAAG 6022
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAG 221770
||||| ||| || || || ||||| || | | | |||| || ||||| || |||
Sbjct 6021 AGGCCAAGTTGCAAACAGCAACCTCATC-TGGAGCACAGTACTCGATAATCTCGGTGCAG 5963
Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830
|||||| || |||||| ||||||| || || || |||||| ||| || |||
Sbjct 5962 AGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCC 5903
Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890
||||||||||| ||||| |||||||| ||| || |||| || | ||| ||
Sbjct 5902 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGC 5843
Query 221891 TCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAGA 221948
| |||| |||| | ||| | ||| | ||||| ||| | | | | || | |
Sbjct 5842 T-TCTGAGCGCGAATAGTCTTGC-GACCACGTCCCTCCCTCTCGTATTTCTCA-TACAAA 5786
Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008
|| | | |||| || || || || ||||||| || || | ||| ||||| |
Sbjct 5785 GCCT--CGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATGA 5728
Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068
| |||||| | ||| | | || | || ||||||||| || || ||||| || ||
Sbjct 5727 GCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAA 5668
Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128
| || | || | | || ||| ||| ||||| ||| || | ||||| | ||||
Sbjct 5667 GGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACT 5608
Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188
|||| | ||| |||||||| ||||| || |||| ||| | || || || |||||||| |
Sbjct 5607 CAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTAC 5548
Query 222189 CACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246
||||||| || || || ||| ||| | |||||||| ||||| | || | | ||
Sbjct 5547 CACCCTGGTCAAC-ATA-TCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACC 5490
Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306
||| || |||||||||||| |||||| | ||| ||| | | | | | |
Sbjct 5489 GTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTT 5430
Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366
|| |||||||||||| || || || |||||||| || |||| |||||||| |||
Sbjct 5429 CAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGAT 5370
Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426
||||| || || ||||| | || | || || || || |||| ||| | || |
Sbjct 5369 ACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGG 5310
Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486
|| || ||||| ||||| |||||| ||| || || ||| | |||||||| || |
Sbjct 5309 GGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGTT 5250
Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCATGT 222545
||| ||||| | ||| | | |||| ||| ||| || | | | | || |||
Sbjct 5249 GTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACAC-TCGCATAA 5191
Query 222546 ACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTC 222603
||||| |||||||| ||| ||| || | |||| ||| ||||| || ||
Sbjct 5190 TCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGA--AGGTATGAACGCTC 5133
Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663
|||||||||||| || ||||| | | || ||||||| ||| || | ||||| |||
Sbjct 5132 CAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGAGTC 5073
Query 222664 CAGCTCCGACTTGTG 222678
|||||| ||||||
Sbjct 5072 GAGCTCCTCCTTGTG 5058
>seq246
Length=51316
Score = 262 bits (290), Expect = 7e-65
Identities = 574/856 (67%), Gaps = 22/856 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||| ||||| || ||| |||||||||||||||||||||||||
Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739
Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| || ||| ||| | ||| || | |||||| || | || ||
Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGC-CTGAATGATGACGAGAAGTACTTCATCTC 23680
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | |||| |||||||| ||||||||||| || || |||||||| ||| |||| |
Sbjct 23679 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 23620
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | | || || ||| | ||||| || |||||||| |||||||| ||
Sbjct 23619 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 23560
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772
|| || | ||||| ||| || || ||| | || ||||| | || |
Sbjct 23559 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 23500
Query 25773 CGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
| || | || | || || ||||| ||| ||| || |||| | ||||||
Sbjct 23499 CCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCG 23441
Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
|||||||| ||||||||| | | ||| | || | |||| | |||| ||||| ||||
Sbjct 23440 ACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCT 23381
Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951
||||||| || ||||| ||||| ||||||||| | ||||| |||||||||||||||||
Sbjct 23380 TTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGA 23321
Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011
|| || |||||| || ||| ||||||||||||||||||| | ||||||||||
Sbjct 23320 AGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTC 23261
Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT--CA 26069
| |||| || |||||||||||||| || | ||| ||| | || | | || ||
Sbjct 23260 TGCACACTGACTTTGCCTGCCTGCTGCACTC---TCAC---CTCAAGAACCGTGCTAGCA 23207
Query 26070 AGAGACCGTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126
|| || || | || ||||||| || ||||| || ||| |||||||
Sbjct 23206 AG-GA-GGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149
Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186
| ||||||||| || || |||| || ||||||||
Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 23089
Query 26187 GTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTA 26245
|| ||| ||||| | |||||| | || || || | ||||| ||| ||| |
Sbjct 23088 GTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCC-A 23030
Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305
|||| || ||||| ||||| ||||| || | | || |||||||||||||| || |||
Sbjct 23029 ACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGC 22970
Query 26306 GGGTCGGCGACTATCA 26321
| |||| |||||| ||
Sbjct 22969 GCGTCGCCGACTACCA 22954
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928826548199680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |