Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq236 264 1e-65
seq246 116 4e-21
>seq236
Length=53426
Score = 264 bits (292), Expect = 1e-65
Identities = 1060/1644 (64%), Gaps = 59/1644 (4%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| | ||||| || | | |||||| || || |||||||| ||||
Sbjct 5178 CCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5237
Query 75272 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329
||||||||||| || ||||| |||| | |||| ||| || | || ||||| |
Sbjct 5238 CTGGAGACATACAACCTCATGTCTAGCAAG--TTCTTCACTCATGCCTCTCCCACCCTGT 5295
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| || ||||| || | | ||| ||||| |||||| | ||| || ||||| |
Sbjct 5296 TCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACG 5355
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
| ||| | |||||||||| ||||| | | ||||| || || ||| |||||
Sbjct 5356 ATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTG 5415
Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509
| ||||| || || || ||||| | | |||| ||| ||| || || |
Sbjct 5416 GTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 5475
Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569
| ||| || | ||||||||||| |||||||| || || ||| ||| || | ||||
Sbjct 5476 ACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATG 5535
Query 75570 TAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623
| | || ||| || |||| || || | || ||||| | || || ||||
Sbjct 5536 TTGACCA---GGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGC 5592
Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683
| ||||| || | ||||||||||| | || ||||| || | ||||||| ||
Sbjct 5593 ACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 5652
Query 75684 GTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG--G 75740
| | || || || | | | || |||||||| || || ||||||||||| |||||| |
Sbjct 5653 CTCGCGA-CTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAG 5711
Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGT 75798
| ||| | ||| | || | || || || || || || || || | ||| || |
Sbjct 5712 AACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCTGACTGCTAT 5768
Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGG---GTAGAGCCAATGC 75855
|| |||||||| || || | || || || || ||||| || | |||
Sbjct 5769 -GGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTGGTCGCAA--- 5824
Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914
|||| | | | | | || | | ||| | | || || || | ||||| |||||||| |
Sbjct 5825 GACTATTCGCG-CTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTA 5883
Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974
|| | ||||| ||||||||||| || ||| ||||| ||||| ||||| ||||||
Sbjct 5884 ACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 5943
Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034
| ||| ||||| || || ||||| || ||| | |||||| | | |||||| |
Sbjct 5944 CCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTG 6003
Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094
|||||||||| ||||| || | ||||| || |||||| || | | || |
Sbjct 6004 CTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGATTACAACGAAGGCTGCT 6063
Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154
||| | | | || ||||||||| |||| ||| | ||| | || || ||| |||
Sbjct 6064 ATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGGTTGTCCGCAACCTCAACAAGATCA 6123
Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214
|||| || || || || || || || || |||||||| ||| |||| |
Sbjct 6124 TTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATATGCGCCACCGACCCA 6183
Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TT 76269
|||| | ||||| || ||||| || || | || | |||| || |||| ||
Sbjct 6184 TTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCT----TGCC-CTGCGCATGCCCTT 6238
Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329
||| || || || || |||| | |||||||| ||||| || || || |
Sbjct 6239 TGAGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGC 6298
Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389
||| ||||| | || | || | | | ||| |||| || |||| |||| ||
Sbjct 6299 CCTTGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATC 6358
Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC-- 76447
|| || ||| | || | || || || || ||||||| | || ||||| || | |
Sbjct 6359 ACCTGCATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAACC-CTCTGACCTG 6416
Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507
| || ||||| |||||||| | ||||||||| | ||| || ||||| | |
Sbjct 6417 TGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTC 6476
Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567
| || || |||||||| ||| || | || || ||||||| || || ||||| ||
Sbjct 6477 CTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGAG 6536
Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627
|| ||||| | |||||||||| | || | ||| || || ||||| ||||||||
Sbjct 6537 CCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 6596
Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---T 76684
|| |||| ||||| | | ||| ||||||||| | | |||||| | |
Sbjct 6597 CCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGTCCGATGCCATGAAGAACCGT 6656
Query 76685 CTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAA 76743
||| || ||| | | || |||||||| || || | | ||||| || ||||||||
Sbjct 6657 ATCATTGCTGAGAAC----GGCTCCATTCAGAACATTCCCAACATCCCCGAAGATATCAA 6712
Query 76744 GAATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGC 76800
| || ||| || || ||||| || || || |||| | ||||| ||
Sbjct 6713 GGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATTGTC---CAGATGGCGGC 6769
Query 76801 AGATCGTGGTCGCTTCATTGATCA 76824
||||||||| |||||||||||
Sbjct 6770 TGATCGTGGTGCTTTCATTGATCA 6793
>seq246
Length=51316
Score = 116 bits (128), Expect = 4e-21
Identities = 348/526 (66%), Gaps = 17/526 (3%)
Strand=Plus/Minus
Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770
||||| || ||||| ||||| ||||||| ||||| |||| ||||| | || |||||
Sbjct 23762 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAAT 23703
Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830
|| | || ||| | ||||| |||||||||| |||||||| | || ||||| |||
Sbjct 23702 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 23643
Query 64831 GTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889
|| ||||| | | | || |||| || || ||||| ||| || || |
Sbjct 23642 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGC-GAGGTCCAGATCCCCGAGGCTCGATG 23584
Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948
||||||| | || | ||| ||| | | | || ||| || || || | |
Sbjct 23583 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 23525
Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAA-GAAGC-AGTTATTTGAAGCCATCCAAAC 65006
| |||| ||||| ||||| || | | | | ||| | | || | ||||| | ||
Sbjct 23524 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 23467
Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTC 65063
| || || ||| |||||||| | ||||| || || ||| | |||| || ||
Sbjct 23466 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 23407
Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123
| ||||| ||| ||||||| |||| ||||| || ||||||||||||||| |||
Sbjct 23406 T---TCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGG 23350
Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183
| || | | || | ||| | |||||||| ||||||||||| || || ||| ||
Sbjct 23349 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTC 23290
Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || || || || || |||||||| ||| || ||||||
Sbjct 23289 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 23244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596557877407360
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