Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq236 264 1e-65 seq246 116 4e-21 >seq236 Length=53426 Score = 264 bits (292), Expect = 1e-65 Identities = 1060/1644 (64%), Gaps = 59/1644 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || | | |||||| || || |||||||| |||| Sbjct 5178 CCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5237 Query 75272 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 ||||||||||| || ||||| |||| | |||| ||| || | || ||||| | Sbjct 5238 CTGGAGACATACAACCTCATGTCTAGCAAG--TTCTTCACTCATGCCTCTCCCACCCTGT 5295 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || ||||| || | | ||| ||||| |||||| | ||| || ||||| | Sbjct 5296 TCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACG 5355 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 | ||| | |||||||||| ||||| | | ||||| || || ||| ||||| Sbjct 5356 ATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTG 5415 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | ||||| || || || ||||| | | |||| ||| ||| || || | Sbjct 5416 GTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 5475 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || | ||||||||||| |||||||| || || ||| ||| || | |||| Sbjct 5476 ACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATG 5535 Query 75570 TAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 | | || ||| || |||| || || | || ||||| | || || |||| Sbjct 5536 TTGACCA---GGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGC 5592 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGT 75683 | ||||| || | ||||||||||| | || ||||| || | ||||||| || Sbjct 5593 ACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 5652 Query 75684 GTAGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG--G 75740 | | || || || | | | || |||||||| || || ||||||||||| |||||| | Sbjct 5653 CTCGCGA-CTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAAG 5711 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGAC-GCGGT 75798 | ||| | ||| | || | || || || || || || || || | ||| || | Sbjct 5712 AACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCTGACTGCTAT 5768 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGG---GTAGAGCCAATGC 75855 || |||||||| || || | || || || || ||||| || | ||| Sbjct 5769 -GGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTGGTCGCAA--- 5824 Query 75856 GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 |||| | | | | | || | | ||| | | || || || | ||||| |||||||| | Sbjct 5825 GACTATTCGCG-CTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTA 5883 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | ||||| ||||||||||| || ||| ||||| ||||| ||||| |||||| Sbjct 5884 ACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 5943 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | ||| ||||| || || ||||| || ||| | |||||| | | |||||| | Sbjct 5944 CCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTG 6003 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 |||||||||| ||||| || | ||||| || |||||| || | | || | Sbjct 6004 CTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGATTACAACGAAGGCTGCT 6063 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 ||| | | | || ||||||||| |||| ||| | ||| | || || ||| ||| Sbjct 6064 ATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGGTTGTCCGCAACCTCAACAAGATCA 6123 Query 76155 TTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 |||| || || || || || || || || |||||||| ||| |||| | Sbjct 6124 TTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATATGCGCCACCGACCCA 6183 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TT 76269 |||| | ||||| || ||||| || || | || | |||| || |||| || Sbjct 6184 TTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCT----TGCC-CTGCGCATGCCCTT 6238 Query 76270 TGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATC 76329 ||| || || || || |||| | |||||||| ||||| || || || | Sbjct 6239 TGAGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGC 6298 Query 76330 CCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTC 76389 ||| ||||| | || | || | | | ||| |||| || |||| |||| || Sbjct 6299 CCTTGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATC 6358 Query 76390 TCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC-- 76447 || || ||| | || | || || || || ||||||| | || ||||| || | | Sbjct 6359 ACCTGCATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAACC-CTCTGACCTG 6416 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | || ||||| |||||||| | ||||||||| | ||| || ||||| | | Sbjct 6417 TGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTC 6476 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || |||||||| ||| || | || || ||||||| || || ||||| || Sbjct 6477 CTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGAG 6536 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 || ||||| | |||||||||| | || | ||| || || ||||| |||||||| Sbjct 6537 CCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 6596 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA---T 76684 || |||| ||||| | | ||| ||||||||| | | |||||| | | Sbjct 6597 CCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGTCCGATGCCATGAAGAACCGT 6656 Query 76685 CTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAA 76743 ||| || ||| | | || |||||||| || || | | ||||| || |||||||| Sbjct 6657 ATCATTGCTGAGAAC----GGCTCCATTCAGAACATTCCCAACATCCCCGAAGATATCAA 6712 Query 76744 GAATCTCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGC 76800 | || ||| || || ||||| || || || |||| | ||||| || Sbjct 6713 GGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATTGTC---CAGATGGCGGC 6769 Query 76801 AGATCGTGGTCGCTTCATTGATCA 76824 ||||||||| ||||||||||| Sbjct 6770 TGATCGTGGTGCTTTCATTGATCA 6793 >seq246 Length=51316 Score = 116 bits (128), Expect = 4e-21 Identities = 348/526 (66%), Gaps = 17/526 (3%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || ||||| ||||| ||||||| ||||| |||| ||||| | || ||||| Sbjct 23762 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAAT 23703 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 23702 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 23643 Query 64831 GTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||||| | | | || |||| || || ||||| ||| || || | Sbjct 23642 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGC-GAGGTCCAGATCCCCGAGGCTCGATG 23584 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | | || ||| || || || | | Sbjct 23583 CTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 23525 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAA-GAAGC-AGTTATTTGAAGCCATCCAAAC 65006 | |||| ||||| ||||| || | | | | ||| | | || | ||||| | || Sbjct 23524 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 23467 Query 65007 TGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTC 65063 | || || ||| |||||||| | ||||| || || ||| | |||| || || Sbjct 23466 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 23407 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 | ||||| ||| ||||||| |||| ||||| || ||||||||||||||| ||| Sbjct 23406 T---TCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGG 23350 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 | || | | || | ||| | |||||||| ||||||||||| || || ||| || Sbjct 23349 TGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTC 23290 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || || || || |||||||| ||| || |||||| Sbjct 23289 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 23244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557877407360