Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq289 228 1e-54 seq330 192 8e-44 seq301 176 6e-39 seq151 143 4e-29 seq237 96.9 5e-15 seq24 84.2 3e-11 >seq289 Length=45676 Score = 228 bits (252), Expect = 1e-54 Identities = 468/688 (68%), Gaps = 11/688 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| | || ||||| ||||| || || ||| | | | | || || ||| || Sbjct 28080 GGTATCGACCTGGGTACTACGTACTCGTGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 28022 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || ||| | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 28021 TATCATCGCCAACGACCAGGGTAACCGAACGACCCCTTCGTTCGTTGCCTTCACCGACAC 27962 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| | || ||||| || || || ||| || |||||||| || || || Sbjct 27961 CGAGCGTCTGATCGGTGATGCGGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 27902 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | || || ||||||||| | || | ||||| | || || Sbjct 27901 CTTCGACGCCAAGCGATTGATCGGACGCAAGTTTGCCGACTCCGAGGTCCAGGCTGACAT 27842 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | |||| ||||| | | | || || Sbjct 27841 GAAGCACTTCCCCT-TCAAGATTGTCGACAAG-GGCTCC-AAGCCCGTCGTCGAGGTCGA 27785 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| || | ||||| || || || || ||| | ||| || Sbjct 27784 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGATCCTGACCAA 27725 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || || | | | || | || || || | || || | ||||| Sbjct 27724 GATGCGTGAGACCGCCGAGTCCTACCTCGGAACCACCGTCAACAACGCCGTCATCACTGT 27665 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 27664 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCCGGTCTCATTGCCGG 27605 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| || || || || || || Sbjct 27604 TCTCAACGTCCTGCGTATCATCAACGAGCCTACCGCTGCTGCCATCGCCTACGGCCTTGA 27545 Query 195844 CAAGAACAAGGACGAAGATAAA---AATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 |||||| || ||| | | | || || | ||||| ||||||||||||||||| || Sbjct 27544 CAAGAA---GGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACCTT 27488 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||||| || || | ||||| | ||||| ||||| || ||| | ||||| ||||| Sbjct 27487 CGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGA 27428 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGAT 195988 ||||| | |||||||||||||||||| Sbjct 27427 CACTCACTTGGGTGGTGAAGATTTCGAT 27400 >seq330 Length=39978 Score = 192 bits (212), Expect = 8e-44 Identities = 172/216 (80%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| |||||||| || |||||||||||||| ||||| || || || ||||| Sbjct 15412 GTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGAC 15353 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| ||||| || || || ||||| ||||| || Sbjct 15352 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGACTGATC 15293 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || |||||||| |||||||| ||||| || |||||| | || |||||| | || |||||| Sbjct 15292 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAG 15233 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || ||||| |||||||| || | || || |||||| Sbjct 15232 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGT 15197 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || |||||||||||||| ||||| || Sbjct 15710 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 15651 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||||| || ||||||||||||||||| || || ||| Sbjct 15650 GATACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 15591 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| || || || || ||||| || || || | || |||||| Sbjct 15590 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 15531 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | ||||| |||||| Sbjct 15530 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGGT 15483 Score = 152 bits (168), Expect = 7e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || || || || || || || || || || |||||||||||||| || | Sbjct 14973 GTGGTATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAAT 14914 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| |||| |||||||||| || ||||| |||||||| || | Sbjct 14913 CTTCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTG 14854 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || | || ||||||||||| ||||| ||||| || || ||| | || | Sbjct 14853 ACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACT 14794 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||| | || |||||| || || ||| | || || | || || ||||| Sbjct 14793 ACAACATCCAGAAGGAGAGCACACTGCACTTGGTCCTGCGTCTGCGTGGTGG 14742 >seq301 Length=43884 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||| ||||| ||||| || Sbjct 7734 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 7675 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| |||||||| || || ||| Sbjct 7674 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 7615 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||| | || || |||||||| ||||| || ||||| || || ||| | || |||||| Sbjct 7614 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTACAAC 7555 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || ||||||||||| || ||||| || || | || || |||||||| Sbjct 7554 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTGC 7505 >seq151 Length=77715 Score = 143 bits (158), Expect = 4e-29 Identities = 472/723 (65%), Gaps = 17/723 (2%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| ||||| ||||||| || || || ||||| || ||||| |||| ||| ||| Sbjct 60011 ACTGTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATT 59952 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| || | || ||||| || || || || ||||| || || || ||| Sbjct 59951 GCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCTATCGCCTACGGT 59892 Query 195839 CTGGA--CAAG-AACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 |||| | | || | ||| | || || || |||||| ||||| ||||||||| Sbjct 59891 CTGGGTGCTGGTAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTTGGTGGTGGT 59832 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || ||||| || | |||||| | ||| || |||||||| ||| Sbjct 59831 ACTTTCGATGTCTCCCTGCTCAACATCCAGGGTGGTGTCTTCACCGTCAAGGCTACCGCT 59772 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTG-A 196014 ||||| || || | ||||| | || || || | | | | | | | || | | Sbjct 59771 GGTGACACCCACTTGGGTGGCCAGGACTTTGACAC-CAACCTGTTGGACCACTGCAAGAA 59713 Query 196015 TGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGG 196072 |||||| ||| |||| ||||| | | | | || | || | || || || | Sbjct 59712 GGAGTTCACTCGCAAGAGCAAGAAGG--ACCCCAGCAACGACCCCCGTGCCCTCCGAAGA 59655 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGG 196130 || | ||||| || || |||||||| || || ||||| | || || || | | Sbjct 59654 CTCCGCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCA 59597 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||||||||| || | || || || |||||| | || || |||||||| |||| Sbjct 59596 TTGAGATTGACTCTCTCTTCGAGGGTGAGGACTTCACCATGACCATCACCCGTGCTCGTT 59537 Query 196191 TTGAAGAGTTAAACTCTGATTTGTTT--AGGAAGTGTATGGAACCTGTTGAACAAGTACT 196248 | || ||| | ||| | | ||| || | | | || || |||| || || || Sbjct 59536 TCGAGGAGCTCAACGCCAAGGCCTTTGCCGGCA--CTCTCGAGCCCGTTGCCCAGGTCCT 59479 Query 196249 TCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308 || || || || ||| || || || |||||||| || || || || || Sbjct 59478 CAAGGATGCCGCTATCGACAAGAGCGCCGTCGAGGAGATTGTCCTGGTCGGTGGTTCTAC 59419 Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAA 196368 |||||| || ||||| || || | || || |||||| | || | | | || Sbjct 59418 CCGTATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGAAGCTCGAGAA 59359 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | || ||||| ||||| || ||||| |||||||| ||||| ||||| | ||| ||||| Sbjct 59358 GAGCATTAACCCCGATGAGGCCGTTGCCTATGGTGCTGCCGTCCAGGCCGGTATCCTCTC 59299 Query 196429 AGG 196431 || Sbjct 59298 CGG 59296 >seq237 Length=53425 Score = 96.9 bits (106), Expect = 5e-15 Identities = 169/242 (70%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| || || || |||||||| | | ||||| ||| | ||| || |||| || Sbjct 5960 CAACGTCAAGCTACCAAGGACGCCGGTATCATTGCCGGTTTGAACGTCCTCCGAATCGTC 5901 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || ||||| || |||||||| |||| | | ||| | | Sbjct 5900 AACGAGCCCACCGCCGCCGCTATTGCCTACGGTCTGGATAAGACTGATGGCGA-GCGCCA 5842 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| ||||||||||||||||| |||||||| || || || || || Sbjct 5841 GATC-ATTG-TCTACGATCTCGGTGGTGGTACTTTTGATGTTTCTCTCCTGTCCATCGAC 5784 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 ||| | ||||| || |||||| || ||||| || || || |||||||| || || Sbjct 5783 AACGGTGTCTTCGAGGTCTTGGCTACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTT 5724 Query 195986 GA 195987 || Sbjct 5723 GA 5722 >seq24 Length=157561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/326 (67%), Gaps = 10/326 (3%) Strand=Plus/Plus Query 198450 TTCAAGGATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTT 198509 |||| ||||||| ||| | || ||| ||| |||| | |||| ||||| || Sbjct 124722 TTCAGCGATGTTGCTGGTCTGGAGGAAGCCAAGACTGAGATTATGGAGTTTGTTAGCTTC 124781 Query 198510 CTTAAAAACCCCGAAAAGTACTATGGAAGT--GGTGCCCGAATCCCACGTGGTGCTCTTC 198567 || || | ||||| |||| | |||| |||||| || || || ||||| ||| Sbjct 124782 CTGAAGCAACCCGAGAAGTTTGA--GAAGCTGGGTGCCAAGATTCCTCGAGGTGCCATTC 124839 Query 198568 TCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGA 198627 ||||||| | || || || || || || ||||| || |||| || || || || Sbjct 124840 TCGCCGGCCCACCAGGAACAGGAAAGACTCTTCTCGCCAAGGCTACTGCTGGAGAGTCTG 124899 Query 198628 GTGTCCCCTTTCTTCAGTGCTCCGCGGC---GAGTTTCATCGAGATGTTCGTTGGTGTTG 198684 | || || ||||||||| | | |||| ||||| | | |||||||| |||||||| | Sbjct 124900 GCGTGCC-TTTCTTCAGCG-TGAGCGGATCTGAGTT-CGTGGAGATGTTTGTTGGTGTGG 124956 Query 198685 GTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCT 198744 || || || || | || | || | ||| || | ||| ||| || ||||||| Sbjct 124957 GTCCTTCTCGTGTGAGAGACTTGTTCGCTGAAGGTCGAAAGAATGCACCTTGCATCATCT 125016 Query 198745 TCATTGATGAGATTGACGCTGTTGGT 198770 ||||||| || || |||||| | ||| Sbjct 125017 TCATTGACGAAATCGACGCTATCGGT 125042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657849473003840