Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq330 100 5e-16 >seq330 Length=39978 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || ||||| || | || | ||| || || || |||||| Sbjct 15481 ATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 15540 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| ||| || | ||| || || || ||||| | | ||| || |||||| Sbjct 15541 GACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGA 15600 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| || | ||| || |||||||||||||| Sbjct 15601 GGAATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCG 15660 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || |||||||| Sbjct 15661 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899636721791040