Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq428 140 1e-27 seq246 140 1e-27 seq322 93.3 1e-13 >seq428 Length=31006 Score = 140 bits (154), Expect = 1e-27 Identities = 220/313 (70%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| | ||| | |||||| ||||||||| || ||| || || ||| Sbjct 20817 TCTTCCAGAGCCTTGACCAGACGTCTCTGAATGTAACCAGTTTCAGCTGTCTTGACGGCT 20876 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| ||||||| |||| || |||||||| | ||| ||| || Sbjct 20877 GTATCAATGAGACCTTCACGACCGGCCATGGCGTGGAAGAAGAACTCGGAGGGTGTAAGA 20936 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | || |||| || || ||||| |||||||| || | ||| |||||| Sbjct 20937 CCACGGAGGTACGAATTCTCCACAAAGCCACGAGCCTCGGGTGAGTAATCGTCCTTGGTG 20996 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || | ||||| |||| ||||||||||| || || ||||| Sbjct 20997 AAATGAGGGAGCGTTCGGTATTTGAAGCCGAATGGAATACGCTTTCCCTCGACAATCTGC 21056 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCAT 302869 ||||| | || ||||||| ||||| || || || | ||||||||||| | | Sbjct 21057 TGTCCGACAAGCGCCGTCATCTGAGAAATGTTAATAGATGA--TCCCTTGGAGCCGGACT 21114 Query 302870 TTACCATAATAAC 302882 ||||| |||| Sbjct 21115 CAGCCATAGTAAC 21127 >seq246 Length=51316 Score = 140 bits (154), Expect = 1e-27 Identities = 247/355 (70%), Gaps = 4/355 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 23596 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 23537 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || || || |||||||| || | | |||| ||| | | || |||||| Sbjct 23536 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 23478 Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || ||||||| ||| ||||| | |||||||| || || |||||||| Sbjct 23477 GCCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCA 23419 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| | ||||| || || ||||| ||||||| || ||||| || || Sbjct 23418 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTT 23359 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||||| || ||||| ||| | | ||||| || Sbjct 23358 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCT 23299 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | ||||||| || ||||| || |||||| Sbjct 23298 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 23244 >seq322 Length=40969 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| |||||||| ||||| || || || |||||||||||||| || | | Sbjct 31238 TGAGCGATTGTCATACGGGACGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 31179 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || || ||| || |||||||| |||||||| Sbjct 31178 CCTTCTCTTGTGAAGGGCATGTCCTCTT-GTCGGTAAGTGACACCAATAGTGCCCTTTTG 31120 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||| || ||||| Sbjct 31119 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 31090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471787955753764