Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq428 140 1e-27
seq246 140 1e-27
seq322 93.3 1e-13
>seq428
Length=31006
Score = 140 bits (154), Expect = 1e-27
Identities = 220/313 (70%), Gaps = 4/313 (1%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| | ||||| | ||| | |||||| ||||||||| || ||| || || |||
Sbjct 20817 TCTTCCAGAGCCTTGACCAGACGTCTCTGAATGTAACCAGTTTCAGCTGTCTTGACGGCT 20876
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
|||||||| ||||| ||||||| |||| || |||||||| | ||| ||| ||
Sbjct 20877 GTATCAATGAGACCTTCACGACCGGCCATGGCGTGGAAGAAGAACTCGGAGGGTGTAAGA 20936
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | || |||| || || ||||| |||||||| || | ||| ||||||
Sbjct 20937 CCACGGAGGTACGAATTCTCCACAAAGCCACGAGCCTCGGGTGAGTAATCGTCCTTGGTG 20996
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || || || || | || | ||||| |||| ||||||||||| || || |||||
Sbjct 20997 AAATGAGGGAGCGTTCGGTATTTGAAGCCGAATGGAATACGCTTTCCCTCGACAATCTGC 21056
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGCAT 302869
||||| | || ||||||| ||||| || || || | ||||||||||| | |
Sbjct 21057 TGTCCGACAAGCGCCGTCATCTGAGAAATGTTAATAGATGA--TCCCTTGGAGCCGGACT 21114
Query 302870 TTACCATAATAAC 302882
||||| ||||
Sbjct 21115 CAGCCATAGTAAC 21127
>seq246
Length=51316
Score = 140 bits (154), Expect = 1e-27
Identities = 247/355 (70%), Gaps = 4/355 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || || ||| || || | ||||| |||||| || ||||| || || |
Sbjct 23596 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 23537
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423
| || || || || || |||||||| || | | |||| ||| | | || ||||||
Sbjct 23536 ACTCCCTGCTCATCGACACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 23478
Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || ||||||| ||| ||||| | |||||||| || || ||||||||
Sbjct 23477 GCCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCA 23419
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| | ||||| || || ||||| ||||||| || ||||| || ||
Sbjct 23418 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTT 23359
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||||| || ||||| ||| | | ||||| ||
Sbjct 23358 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCT 23299
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||| ||||| || || || | ||||||| || ||||| || ||||||
Sbjct 23298 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCC 23244
>seq322
Length=40969
Score = 93.3 bits (102), Expect = 1e-13
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| ||||| |||||||| ||||| || || || |||||||||||||| || | |
Sbjct 31238 TGAGCGATTGTCATACGGGACGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 31179
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || ||||||||||| |||| || || ||| || |||||||| ||||||||
Sbjct 31178 CCTTCTCTTGTGAAGGGCATGTCCTCTT-GTCGGTAAGTGACACCAATAGTGCCCTTTTG 31120
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||| |||||| || |||||
Sbjct 31119 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 31090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471787955753764
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |