Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq153 152 6e-31 seq246 134 2e-25 seq55 120 4e-21 seq236 113 6e-19 >seq153 Length=76516 Score = 152 bits (168), Expect = 6e-31 Identities = 232/331 (70%), Gaps = 6/331 (2%) Strand=Plus/Plus Query 18164 CCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCA 18223 |||| |||||||||||||| ||| | | || ||||| || |||||| | | | ||| Sbjct 60565 CCGAAGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCTCCATCACCA 60624 Query 18224 CGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGC 18283 | || || ||||| || ||||||| |||||| || ||||| || |||||||||| | Sbjct 60625 CTCCCCGAAACGAAAAGGACCGCGTCACCATCCACTCTGGCACCGAAGACGGCCTCACTC 60684 Query 18284 TCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCG 18343 ||||| | || || |||| || ||||| |||||||| ||| ||||| | Sbjct 60685 TCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGACCAGCGCCCCAAGGACTACGGCA 60744 Query 18344 ACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGT 18397 || | || | || || ||| || ||||||| |||||| | | |||| Sbjct 60745 ACCAGACCATCGACCTCTACCCCCGTCCCAGCCATGCCGACTGGACCTACCTCGAAAAGT 60804 Query 18398 ACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCG 18457 ||||||||||||| || || ||||| ||||| ||| ||||||||| | || | Sbjct 60805 ACGGCATCAAGGCCTCCTCCGGCGGCGGCCGCAGCAGTGCGCGCGAGACCATTGCCCGTG 60864 Query 18458 TCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488 | ||||||||||| ||||||||||| ||||| Sbjct 60865 TGGCCGCCGGCGCCGTCGCCGAGAAGTGGCT 60895 >seq246 Length=51316 Score = 134 bits (148), Expect = 2e-25 Identities = 229/321 (71%), Gaps = 21/321 (7%) Strand=Plus/Plus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| ||||| ||| ||| | |||||| | Sbjct 23237 GCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAA 23292 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268 |||| || || |||||||| || |||||||||||||| ||||||| | | || || | Sbjct 23293 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAG--GCAAAGGCAC 23350 Query 869269 CG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327 || ||| ||||| ||||||||||| |||||| | | || |||| ||||||| | || Sbjct 23351 CGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 23408 Query 869328 GGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384 | | |||| | ||||||||| || |||||||||||||| || | | | || | Sbjct 23409 G----TTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAA 23464 Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442 || || |||||| ||||||| | | | | ||| | ||||||| |||||||| Sbjct 23465 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTGTC 23522 Query 869443 GATCAGGAGCGAATAGGTCTC 869463 ||| || || || |||||||| Sbjct 23523 GATGAGCAGGGAGTAGGTCTC 23543 Score = 105 bits (116), Expect = 8e-17 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| |||||| |||||||||||||| |||| || || Sbjct 22948 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATG 23007 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | || ||||||| | ||||||| ||| ||| || |||||| Sbjct 23008 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTAGAGCGA-- 23065 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | ||||| || ||||| |||||||| |||||||| ||| ||| || ||||||||| | Sbjct 23066 CAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAA 23125 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| ||||| | ||| || ||| || || || Sbjct 23126 GCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGA 23185 Query 868929 TGAT 868932 |||| Sbjct 23186 TGAT 23189 >seq55 Length=122558 Score = 120 bits (132), Expect = 4e-21 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | |||| ||||||||| ||||| || | ||| | || || ||| ||||||||||| Sbjct 81487 GCCTCAAACTTCCTCGACATTAAGCCGCTCTTGGATGTGGGCTGTAAGACTGTGGCCAAC 81428 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||| |||||||||||||| || ||||||| Sbjct 81427 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACATCA 81379 >seq236 Length=53426 Score = 113 bits (124), Expect = 6e-19 Identities = 215/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || | || |||| ||| ||||| || |||||||| | | ||||| || Sbjct 5543 CTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGA 5484 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | || || ||||| Sbjct 5483 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCC 5424 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || || ||| |||||| || | || || ||| || || ||||| ||||| |||| Sbjct 5423 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAGAGTGTCATAGATACCCT 5365 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 |||| ||| |||||||||| || | ||||| || || || | |||| || | Sbjct 5364 CGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTAC 5305 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | |||||||| || ||||| | || ||||| |||| | |||||| || ||| | Sbjct 5304 CTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTATG 5245 Query 1630364 TGGCGAGCACGCGC 1630377 | | || || ||| Sbjct 5244 TCTCCAGGACACGC 5231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107010194318324