Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq153 152 6e-31
seq246 134 2e-25
seq55 120 4e-21
seq236 113 6e-19
>seq153
Length=76516
Score = 152 bits (168), Expect = 6e-31
Identities = 232/331 (70%), Gaps = 6/331 (2%)
Strand=Plus/Plus
Query 18164 CCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCA 18223
|||| |||||||||||||| ||| | | || ||||| || |||||| | | | |||
Sbjct 60565 CCGAAGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCCGGCCAGTCCTCCATCACCA 60624
Query 18224 CGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGC 18283
| || || ||||| || ||||||| |||||| || ||||| || |||||||||| |
Sbjct 60625 CTCCCCGAAACGAAAAGGACCGCGTCACCATCCACTCTGGCACCGAAGACGGCCTCACTC 60684
Query 18284 TCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCG 18343
||||| | || || |||| || ||||| |||||||| ||| ||||| |
Sbjct 60685 TCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGACCAGCGCCCCAAGGACTACGGCA 60744
Query 18344 ACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGT 18397
|| | || | || || ||| || ||||||| |||||| | | ||||
Sbjct 60745 ACCAGACCATCGACCTCTACCCCCGTCCCAGCCATGCCGACTGGACCTACCTCGAAAAGT 60804
Query 18398 ACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCG 18457
||||||||||||| || || ||||| ||||| ||| ||||||||| | || |
Sbjct 60805 ACGGCATCAAGGCCTCCTCCGGCGGCGGCCGCAGCAGTGCGCGCGAGACCATTGCCCGTG 60864
Query 18458 TCGCCGCCGGCGCGGTCGCCGAGAAATGGCT 18488
| ||||||||||| ||||||||||| |||||
Sbjct 60865 TGGCCGCCGGCGCCGTCGCCGAGAAGTGGCT 60895
>seq246
Length=51316
Score = 134 bits (148), Expect = 2e-25
Identities = 229/321 (71%), Gaps = 21/321 (7%)
Strand=Plus/Plus
Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209
||||| | ||||||| || | ||| ||| ||||| ||| ||| | |||||| |
Sbjct 23237 GCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAA 23292
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268
|||| || || |||||||| || |||||||||||||| ||||||| | | || || |
Sbjct 23293 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAG--GCAAAGGCAC 23350
Query 869269 CG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327
|| ||| ||||| ||||||||||| |||||| | | || |||| ||||||| | ||
Sbjct 23351 CGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 23408
Query 869328 GGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384
| | |||| | ||||||||| || |||||||||||||| || | | | || |
Sbjct 23409 G----TTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAA 23464
Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442
|| || |||||| ||||||| | | | | ||| | ||||||| ||||||||
Sbjct 23465 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTGTC 23522
Query 869443 GATCAGGAGCGAATAGGTCTC 869463
||| || || || ||||||||
Sbjct 23523 GATGAGCAGGGAGTAGGTCTC 23543
Score = 105 bits (116), Expect = 8e-17
Identities = 171/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | |||||| |||||| |||||||||||||| |||| || ||
Sbjct 22948 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATG 23007
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | || ||||||| | ||||||| ||| ||| || ||||||
Sbjct 23008 TTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTAGAGCGA-- 23065
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| ||||| || ||||| |||||||| |||||||| ||| ||| || ||||||||| |
Sbjct 23066 CAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAA 23125
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || || || | |||| ||| ||||| | ||| || ||| || || ||
Sbjct 23126 GCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGA 23185
Query 868929 TGAT 868932
||||
Sbjct 23186 TGAT 23189
>seq55
Length=122558
Score = 120 bits (132), Expect = 4e-21
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| | |||| ||||||||| ||||| || | ||| | || || ||| |||||||||||
Sbjct 81487 GCCTCAAACTTCCTCGACATTAAGCCGCTCTTGGATGTGGGCTGTAAGACTGTGGCCAAC 81428
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||| |||||||||||||| || |||||||
Sbjct 81427 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACATCA 81379
>seq236
Length=53426
Score = 113 bits (124), Expect = 6e-19
Identities = 215/314 (68%), Gaps = 2/314 (1%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || | || |||| ||| ||||| || |||||||| | | ||||| ||
Sbjct 5543 CTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGA 5484
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||| | ||||| ||| || | || || |||||
Sbjct 5483 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCC 5424
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243
||| || || ||| |||||| || | || || ||| || || ||||| ||||| ||||
Sbjct 5423 GATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAGAGTGTCATAGATACCCT 5365
Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303
|||| ||| |||||||||| || | ||||| || || || | |||| || |
Sbjct 5364 CGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTAC 5305
Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363
| |||||||| || ||||| | || ||||| |||| | |||||| || ||| |
Sbjct 5304 CTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTATG 5245
Query 1630364 TGGCGAGCACGCGC 1630377
| | || || |||
Sbjct 5244 TCTCCAGGACACGC 5231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107010194318324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |