Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq330 100 3e-16 seq301 96.9 3e-15 >seq330 Length=39978 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || ||||| || || || || ||||| || ||| | || Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 14908 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 14849 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || |||||||| || | | | || || || ||| Sbjct 14848 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 14789 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| |||||||| |||| |||| || ||| Sbjct 14788 ATCCAGAAGGAGAGCACACTGCACTTGGTCCTGCGTCTGCGTGGTGGC 14741 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || || || | || || ||| | | Sbjct 15196 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 15137 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||| || ||||| || || || || || ||||| Sbjct 15136 GACACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 15077 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | |||||||| || || ||||| ||||| Sbjct 15076 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGA 15042 >seq301 Length=43884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || || || || || || | | Sbjct 7735 GATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 7676 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 7675 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 7616 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||| || || || |||||||||||| ||| | || || || || Sbjct 7615 GCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTACAA 7556 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| |||| |||| |||| || || Sbjct 7555 CATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 7508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449888759512160