Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq246 170 3e-36 seq55 116 6e-20 seq236 105 1e-16 seq159 98.7 2e-14 >seq246 Length=51316 Score = 170 bits (188), Expect = 3e-36 Identities = 241/335 (72%), Gaps = 19/335 (6%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| || || |||||||| || ||||| Sbjct 23262 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 23321 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||||| || || || || ||| ||||| ||||||||||| || Sbjct 23322 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACGGCAGC 23378 Query 794457 AAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCAT 794513 |||| | || || |||| |||||| || || | | ||| ||||||||| || Sbjct 23379 AAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGAT 23432 Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573 ||||| || ||||| || | | | || | || || |||||| ||||||| | Sbjct 23433 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG-- 23490 Query 794574 CTTCTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631 || | | | | || ||||| ||||||||||||||| || ||||||||||| |||||| Sbjct 23491 CTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 23550 Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| || || |||||||||||| || ||||| Sbjct 23551 ATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 23585 Score = 111 bits (122), Expect = 2e-18 Identities = 177/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | |||||| |||||| |||||||||||||| ||| Sbjct 22940 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 22999 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | || || |||||| | || |||||||| | | |||| ||||||| || Sbjct 23000 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTA 23059 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||| ||||||| || ||||| || || ||||||||||| ||| ||| || ||| Sbjct 23060 GAGCGA--CAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTT 23117 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | || || ||| || | |||| | | ||||| | ||| || ||| || Sbjct 23118 CATGCCAAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGC 23177 Query 794129 CTCGATGATGAT 794140 || ||||||| Sbjct 23178 ATCAGTGATGAT 23189 >seq55 Length=122558 Score = 116 bits (128), Expect = 6e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | |||| ||||||||| ||||| ||| | ||| |||| || ||||| ||||||||| Sbjct 81487 GCCTCAAACTTCCTCGACATTAAGCCGCTCTTGGATGTGGGCTGTAAGACTGTGGCCAAC 81428 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| ||||| || ||||||||||| || ||||||| Sbjct 81427 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACATCA 81379 >seq236 Length=53426 Score = 105 bits (116), Expect = 1e-16 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| | || |||| ||| ||||| || |||||||| | || ||||| || Sbjct 5543 CTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGA 5484 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||| | ||| || | || || ||||| Sbjct 5483 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCC 5424 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | ||||| || || ||||| ||||| Sbjct 5423 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTC 5364 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || | ||| || || Sbjct 5363 GATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACC 5304 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || ||||| || ||||| Sbjct 5303 TGCGTTGAACAGGGTGGG 5286 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 |||||||||||||| ||||||||||| ||| ||| || |||| || ||| ||| Sbjct 6298 GCCGCATGGTAGATGGTCTCAAAGATC-TGCTTGTTCAGCTGACGAGCCTCGGGAGACTC 6240 Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168 | |||| | || || || || |||||||| || ||||| || || ||||| || Sbjct 6239 AAAGGGCATGCGCAGGGCAAGGAAA--GCGTCGGCAAGACCCTGGACACCAACGCCAATG 6182 Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228 || |||||||||| || || |||||||| | || ||||||||||||| || || Sbjct 6181 GGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATG 6122 Query 2070229 ACGCGGTTGAGGTTG 2070243 | |||||||||| Sbjct 6121 ATCTTGTTGAGGTTG 6107 >seq159 Length=74403 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||||| ||| || ||| Sbjct 28291 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAATTCACCCGGCAG 28232 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||||| || || | ||||||||||| |||| Sbjct 28231 GATCAATCGGACAGATGTCTGGATCTCTCGGG 28200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916079179190108