Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq246 170 3e-36
seq55 116 6e-20
seq236 105 1e-16
seq159 98.7 2e-14
>seq246
Length=51316
Score = 170 bits (188), Expect = 3e-36
Identities = 241/335 (72%), Gaps = 19/335 (6%)
Strand=Plus/Plus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | |||||| |||| || || |||||||| || |||||
Sbjct 23262 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTT 23321
Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||||||||| ||||||| || || || || ||| ||||| ||||||||||| ||
Sbjct 23322 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACGGCAGC 23378
Query 794457 AAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCAT 794513
|||| | || || |||| |||||| || || | | ||| ||||||||| ||
Sbjct 23379 AAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCACTTGAT 23432
Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573
||||| || ||||| || | | | || | || || |||||| ||||||| |
Sbjct 23433 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAG-- 23490
Query 794574 CTTCTCGACCGGGTC--CTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631
|| | | | | || ||||| ||||||||||||||| || ||||||||||| ||||||
Sbjct 23491 CTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 23550
Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||||| || || |||||||||||| || |||||
Sbjct 23551 ATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 23585
Score = 111 bits (122), Expect = 2e-18
Identities = 177/252 (70%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | |||||| |||||| |||||||||||||| |||
Sbjct 22940 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 22999
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008
| || || |||||| | || |||||||| | | |||| ||||||| ||
Sbjct 23000 GAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTA 23059
Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
|||||| ||||||| || ||||| || || ||||||||||| ||| ||| || |||
Sbjct 23060 GAGCGA--CAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTT 23117
Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||||| | || || ||| || | |||| | | ||||| | ||| || ||| ||
Sbjct 23118 CATGCCAAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGC 23177
Query 794129 CTCGATGATGAT 794140
|| |||||||
Sbjct 23178 ATCAGTGATGAT 23189
>seq55
Length=122558
Score = 116 bits (128), Expect = 6e-20
Identities = 91/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| | |||| ||||||||| ||||| ||| | ||| |||| || ||||| |||||||||
Sbjct 81487 GCCTCAAACTTCCTCGACATTAAGCCGCTCTTGGATGTGGGCTGTAAGACTGTGGCCAAC 81428
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| ||||| || ||||||||||| || |||||||
Sbjct 81427 ATGATCAAGGGCAAGTCCCCCGAAGAGATCCGCAAGACATTCAACATCA 81379
>seq236
Length=53426
Score = 105 bits (116), Expect = 1e-16
Identities = 178/258 (69%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| ||||| | || |||| ||| ||||| || |||||||| | || ||||| ||
Sbjct 5543 CTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGA 5484
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||| | ||| | ||| || | || || |||||
Sbjct 5483 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCC 5424
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| |||||| || | || || | ||||| || || ||||| |||||
Sbjct 5423 GATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTC 5364
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| || || || | ||| || ||
Sbjct 5363 GATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACC 5304
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
|| ||||| || |||||
Sbjct 5303 TGCGTTGAACAGGGTGGG 5286
Score = 91.5 bits (100), Expect = 2e-12
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCTC 2070110
|||||||||||||| ||||||||||| ||| ||| || |||| || ||| |||
Sbjct 6298 GCCGCATGGTAGATGGTCTCAAAGATC-TGCTTGTTCAGCTGACGAGCCTCGGGAGACTC 6240
Query 2070111 CCACGGCAGGTCCAT--CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATC 2070168
| |||| | || || || || |||||||| || ||||| || || ||||| ||
Sbjct 6239 AAAGGGCATGCGCAGGGCAAGGAAA--GCGTCGGCAAGACCCTGGACACCAACGCCAATG 6182
Query 2070169 GGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATC 2070228
|| |||||||||| || || |||||||| | || ||||||||||||| || ||
Sbjct 6181 GGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATG 6122
Query 2070229 ACGCGGTTGAGGTTG 2070243
| ||||||||||
Sbjct 6121 ATCTTGTTGAGGTTG 6107
>seq159
Length=74403
Score = 98.7 bits (108), Expect = 2e-14
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||||||||||| |||||| ||| || |||
Sbjct 28291 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAATTCACCCGGCAG 28232
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||||| || || | ||||||||||| ||||
Sbjct 28231 GATCAATCGGACAGATGTCTGGATCTCTCGGG 28200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916079179190108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |