Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq330 104 2e-17 >seq330 Length=39978 Score = 104 bits (114), Expect = 2e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || || | ||||| ||| || || || ||||| || || | ||| ||||||| Sbjct 14981 ACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAA-GGTGCGAC 15039 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || || || ||||||||| | || | | ||||||||||| ||||||||||| | Sbjct 15040 CGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCT 15099 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||| || ||| |||| ||||||| | || | ||||| || ||| || || | || Sbjct 15100 TGTCCTG-AATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTG 15158 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || || || || || || |||||||| Sbjct 15159 ATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211819681652