Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq330 120 6e-22
>seq330
Length=39978
Score = 120 bits (132), Expect = 6e-22
Identities = 122/159 (77%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711
|||||| || || || || ||||||||||| || | || ||||| || || || || ||
Sbjct 15038 ACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTC 15097
Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771
||| || |||||||||| ||| ||||| || || || || | ||| || ||||| ||
Sbjct 15098 CTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGT 15157
Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||||||| ||||||||||| || || ||||||||
Sbjct 15158 GATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196
Score = 104 bits (114), Expect = 5e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || |||||| || |||||||| || || ||||| || || || ||
Sbjct 14742 CCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 14801
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | ||||||||| || || || ||||||||||| | | || || || |||||
Sbjct 14802 AAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGA 14861
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| || |||||||| | || || || || || || || || ||| ||
Sbjct 14862 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACC 14921
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| |||| ||||| || || ||||||||
Sbjct 14922 TCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || || || ||||| || || || || || ||| ||| ||
Sbjct 15496 CGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA 15555
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || ||||| || ||||| || || || | || || || ||||| || |||||||||
Sbjct 15556 TCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTA 15615
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| | || ||||| || || ||||| || || || || | || ||
Sbjct 15616 TCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATG 15675
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||||| || || || |||||
Sbjct 15676 GTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981807424772908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |