Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq236 269 3e-67
seq330 131 2e-25
seq23 107 2e-18
seq301 104 2e-17
seq61 95.1 1e-14
>seq236
Length=53426
Score = 269 bits (298), Expect = 3e-67
Identities = 1122/1752 (64%), Gaps = 49/1752 (3%)
Strand=Plus/Minus
Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109
|||||| ||| |||||||| || ||||| ||||| ||||| | |||| | ||||
Sbjct 6802 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGA 6743
Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169
||||||||| | |||||||| || |||||||| ||||| ||| | |||
Sbjct 6742 GAA---ATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATGTTGGGAATG 6686
Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229
||| | |||||| | |||| || | || ||| | || | | |||
Sbjct 6685 TTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCA 6626
Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289
|||| |||||| | || || | | || || ||||| ||||||||||| || ||
Sbjct 6625 GTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACA 6566
Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349
|| ||| | || | |||| || | || || || |||||||||| |||| ||||||
Sbjct 6565 CGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGG 6506
Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409
| || | || || ||||| || | |||| ||||||| |||| | | ||
Sbjct 6505 GACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG 6446
Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469
|| | ||| || | |||| ||||| || || ||| | || | ||||||||||
Sbjct 6445 ATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTGACATCCCACATGTCG 6386
Query 148470 TACTGCAGAATGCCG-CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
| || || ||||| ||| | || | | |||| | | || ||| || || | | |
Sbjct 6385 AATTGGAGGATGCCCTCGGATGCAGGTGAT-CCCTTGAATGATTCGTAGGGACCCTCCAC 6327
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| || | || ||||| || || | | ||| || ||||| || ||| |
Sbjct 6326 CTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTT 6267
Query 148589 GTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTC 148645
||| ||| | ||| ||| || | ||||| ||||| | || |||||
Sbjct 6266 GTTCAGCTGACGAGCC---TCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTC 6210
Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705
|||||| ||||| || || ||||||||||| ||||| || ||| | ||| ||
Sbjct 6209 GGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTC 6150
Query 148706 CTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765
|| || || ||||||||| || |||||||||| || ||||| || |||||||| ||
Sbjct 6149 CTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGT 6090
Query 148766 AATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACG-ATGCATCGGT 148815
| | | ||| | ||| || || |||| ||| || | ||| |
Sbjct 6089 GACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGG-- 6032
Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875
| ||| | |||||| | ||||| || || |||||| || || | |||||| | |
Sbjct 6031 --AGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAA 5974
Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935
|||||| ||| || ||| || ||| |||| |||||| || |||||||||| ||
Sbjct 5973 TCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGT 5914
Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA 148995
|||| || |||||||| |||||| | || ||||| || ||| | ||||| |||
Sbjct 5913 TGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGG 5854
Query 148996 ACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTAT 149051
| ||| | ||| ||||| | ||||| | || |||||| |||||||
Sbjct 5853 AATACCACAGCTTCTGAGCGCGAATAGTCTTGCGACCA----CGTCCCTCCCTCTCGTAT 5798
Query 149052 AAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGC 149111
||||| ||||||| ||||||| ||||| || | || || ||||| | ||
Sbjct 5797 TTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTG 5738
Query 149112 GGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACC 149171
||||||||||||| ||| | || | | || |||||||| || |||||||| | |
Sbjct 5737 GGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATC 5678
Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGG 149231
||||| || | | |||||| || | ||||| ||| ||| ||| ||
Sbjct 5677 CAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGA 5618
Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291
| || | || | ||| |||||||| ||||| | ||| | || | || ||
Sbjct 5617 TCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGA 5558
Query 149292 CGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348
|||||| || |||||||| || | | | ||||||| || ||||||| ||| ||
Sbjct 5557 CGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGA 5498
Query 149349 TCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407
||| || | | || ||||| || ||| |||| | |||| || || |
Sbjct 5497 ATAATACCGTTAGAGGTACCGTTGGTGCCAGC-AATGTAAGAGCCGGTGGCACGGATGCG 5439
Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GCCGAG 149464
|| ||||| | |||||| || || ||| | ||| || || || || ||| | |||
Sbjct 5438 ATGGACGTTCAAGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCTTCAGAG 5380
Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524
||| ||||| ||||||||||| ||| ||||||| | || ||||| ||| |||
Sbjct 5379 TGTC--ATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAG 5322
Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCT 149583
|| | | || || || ||||| |||||| ||| || || || | || ||
Sbjct 5321 CTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCT 5262
Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643
| ||| | | ||| | ||| || || || || ||||| || || |||||| | |
Sbjct 5261 AG-ACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAG 5203
Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703
|| ||||| | ||| ||||| || ||||| | | ||| ||| || || | ||
Sbjct 5202 ACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGT 5143
Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763
| || || |||||| |||| ||||| | ||||| ||||| || ||| | |||
Sbjct 5142 ATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAA 5083
Query 149764 TGGCGGCGTCGA 149775
|||||| |||||
Sbjct 5082 TGGCGGAGTCGA 5071
>seq330
Length=39978
Score = 131 bits (144), Expect = 2e-25
Identities = 151/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| || || | | | |||||||| |||||||
Sbjct 15513 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 15571
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| || ||||||||||| ||||| ||||||||||| || |||||| ||
Sbjct 15572 CAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACT 15631
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | || |||| | ||| || |||| ||||| ||| |||||||| || |
Sbjct 15632 TCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 15691
Query 133642 TTTTTACGAAAATCTGCATGG 133662
| || ||||| || |||||||
Sbjct 15692 TCTTGACGAAGATTTGCATGG 15712
Score = 125 bits (138), Expect = 7e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| |||| || ||| ||| ||| || |||||||| || ||
Sbjct 14777 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC-GTCTTCCAGCTGCTTACCAGCAA 14835
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
| || | ||||||||||| ||||| ||||| |||||||| ||||| ||||| |
Sbjct 14836 AGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGT 14895
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||||| | ||||| |||| ||||| || |||||||||||||| || |
Sbjct 14896 TGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGA 14955
Query 133648 CGAAAATCTGCAT 133660
|||||||||||||
Sbjct 14956 CGAAAATCTGCAT 14968
Score = 102 bits (112), Expect = 8e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||| ||| | || | | | ||||| |||||||| ||
Sbjct 15228 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCAAGCTGCTTACC 15286
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || ||||||||||| ||||||||||| |||||||| |||||| |||
Sbjct 15287 AGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 15346
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | || || | | |||||| |||| ||||| ||| || || || || ||
Sbjct 15347 GACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 15406
Query 133643 TTTTACGA 133650
|| ||||
Sbjct 15407 CTTGACGA 15414
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| |||| || ||| ||| |||||| ||||||||||| ||
Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC-GTCCTCAAGCTGCTTGCCAGCAA 15063
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
| || || |||||||| || || || || || |||||||| |||||| |||| |
Sbjct 15064 AGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGATTTGACAT 15123
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
|| | ||||| | | || || || | |||| ||| |||||||||| || || |
Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183
Query 133648 CGAAAATCTGCAT 133660
|||| ||||||||
Sbjct 15184 CGAAGATCTGCAT 15196
>seq23
Length=158060
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||||||||||||||| || | || | ||||||||||| || || ||||| ||||||
Sbjct 67429 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 67488
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||||| | || | |||||||| || ||| || || | ||||| |
Sbjct 67489 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 67548
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652
|| ||||| ||||| || || ||||||
Sbjct 67549 GTCTTGCCCGTCAGGGTCTTCACGAAA 67575
>seq301
Length=43884
Score = 104 bits (114), Expect = 2e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| || ||||| ||| | || | | | ||||| |||||||| |
Sbjct 7537 GGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCA-TCCTCCAGCTGCTTAC 7595
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | ||||||||||| || || ||||| |||||||| |||||| ||
Sbjct 7596 CAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 7655
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | ||||||| | |||||| || | ||||| || || || || || |
Sbjct 7656 TGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 7715
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 7716 TCTTGACGAAAATCTGCAT 7734
>seq61
Length=119690
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531
||||| || ||||| |||| || ||| ||| ||| || |||||||| || ||||| ||
Sbjct 2945 TTCTGGATGTTGTAGTCGCTCAAGGTGTGACT-GTCTTCCAGCTGCTTACCAGCGTAGAT 2887
Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591
| ||||||||||| || | ||||| || ||||| ||||| ||||| | ||
Sbjct 2886 CAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTTGTC 2827
Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651
| ||||||| | ||||| | || ||||| || |||||||| | || || |||||
Sbjct 2826 GATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGTCTTGACGAA 2767
Query 133652 AATCTGCAT 133660
|||||| ||
Sbjct 2766 AATCTGTAT 2758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483411300781280
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