Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq236 269 3e-67 seq330 131 2e-25 seq23 107 2e-18 seq301 104 2e-17 seq61 95.1 1e-14 >seq236 Length=53426 Score = 269 bits (298), Expect = 3e-67 Identities = 1122/1752 (64%), Gaps = 49/1752 (3%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 |||||| ||| |||||||| || ||||| ||||| ||||| | |||| | |||| Sbjct 6802 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGA 6743 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 ||||||||| | |||||||| || |||||||| ||||| ||| | ||| Sbjct 6742 GAA---ATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATGTTGGGAATG 6686 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | |||||| | |||| || | || ||| | || | | ||| Sbjct 6685 TTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCA 6626 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 |||| |||||| | || || | | || || ||||| ||||||||||| || || Sbjct 6625 GTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACA 6566 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| | || | |||| || | || || || |||||||||| |||| |||||| Sbjct 6565 CGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGG 6506 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | || | || || ||||| || | |||| ||||||| |||| | | || Sbjct 6505 GACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTG 6446 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | ||| || | |||| ||||| || || ||| | || | |||||||||| Sbjct 6445 ATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTGACATCCCACATGTCG 6386 Query 148470 TACTGCAGAATGCCG-CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 | || || ||||| ||| | || | | |||| | | || ||| || || | | | Sbjct 6385 AATTGGAGGATGCCCTCGGATGCAGGTGAT-CCCTTGAATGATTCGTAGGGACCCTCCAC 6327 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || | || ||||| || || | | ||| || ||||| || ||| | Sbjct 6326 CTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTT 6267 Query 148589 GTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTC 148645 ||| ||| | ||| ||| || | ||||| ||||| | || ||||| Sbjct 6266 GTTCAGCTGACGAGCC---TCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTC 6210 Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705 |||||| ||||| || || ||||||||||| ||||| || ||| | ||| || Sbjct 6209 GGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTC 6150 Query 148706 CTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765 || || || ||||||||| || |||||||||| || ||||| || |||||||| || Sbjct 6149 CTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGT 6090 Query 148766 AATTCTGCGCAGCAATTCAAAATCGTAC---------TTGTCATCTACG-ATGCATCGGT 148815 | | | ||| | ||| || || |||| ||| || | ||| | Sbjct 6089 GACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGG-- 6032 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 | ||| | |||||| | ||||| || || |||||| || || | |||||| | | Sbjct 6031 --AGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAA 5974 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||||| ||| || ||| || ||| |||| |||||| || |||||||||| || Sbjct 5973 TCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGT 5914 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA 148995 |||| || |||||||| |||||| | || ||||| || ||| | ||||| ||| Sbjct 5913 TGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGG 5854 Query 148996 ACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGCTCGTAT 149051 | ||| | ||| ||||| | ||||| | || |||||| ||||||| Sbjct 5853 AATACCACAGCTTCTGAGCGCGAATAGTCTTGCGACCA----CGTCCCTCCCTCTCGTAT 5798 Query 149052 AAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGC 149111 ||||| ||||||| ||||||| ||||| || | || || ||||| | || Sbjct 5797 TTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTG 5738 Query 149112 GGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACC 149171 ||||||||||||| ||| | || | | || |||||||| || |||||||| | | Sbjct 5737 GGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATC 5678 Query 149172 CAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGG 149231 ||||| || | | |||||| || | ||||| ||| ||| ||| || Sbjct 5677 CAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGA 5618 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 | || | || | ||| |||||||| ||||| | ||| | || | || || Sbjct 5617 TCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGA 5558 Query 149292 CGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 |||||| || |||||||| || | | | ||||||| || ||||||| ||| || Sbjct 5557 CGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGA 5498 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGT-AGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 ||| || | | || ||||| || ||| |||| | |||| || || | Sbjct 5497 ATAATACCGTTAGAGGTACCGTTGGTGCCAGC-AATGTAAGAGCCGGTGGCACGGATGCG 5439 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC-GCCGAG 149464 || ||||| | |||||| || || ||| | ||| || || || || ||| | ||| Sbjct 5438 ATGGACGTTCAAGCCGATACCACCAGCCAT-CTTGGAAATCATGGCACATGTCTTCAGAG 5380 Query 149465 CGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACAT 149524 ||| ||||| ||||||||||| ||| ||||||| | || ||||| ||| ||| Sbjct 5379 TGTC--ATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAG 5322 Query 149525 TTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCT 149583 || | | || || || ||||| |||||| ||| || || || | || || Sbjct 5321 CTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCT 5262 Query 149584 GGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGG 149643 | ||| | | ||| | ||| || || || || ||||| || || |||||| | | Sbjct 5261 AG-ACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAG 5203 Query 149644 CGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGT 149703 || ||||| | ||| ||||| || ||||| | | ||| ||| || || | || Sbjct 5202 ACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGT 5143 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAA 149763 | || || |||||| |||| ||||| | ||||| ||||| || ||| | ||| Sbjct 5142 ATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAA 5083 Query 149764 TGGCGGCGTCGA 149775 |||||| ||||| Sbjct 5082 TGGCGGAGTCGA 5071 >seq330 Length=39978 Score = 131 bits (144), Expect = 2e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || || | | | |||||||| ||||||| Sbjct 15513 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 15571 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| ||||| ||||||||||| || |||||| || Sbjct 15572 CAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACT 15631 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || |||| | ||| || |||| ||||| ||| |||||||| || | Sbjct 15632 TCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 15691 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 15692 TCTTGACGAAGATTTGCATGG 15712 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| || ||| ||| ||| || |||||||| || || Sbjct 14777 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC-GTCTTCCAGCTGCTTACCAGCAA 14835 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || | ||||||||||| ||||| ||||| |||||||| ||||| ||||| | Sbjct 14836 AGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGT 14895 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||||| | ||||| |||| ||||| || |||||||||||||| || | Sbjct 14896 TGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGA 14955 Query 133648 CGAAAATCTGCAT 133660 ||||||||||||| Sbjct 14956 CGAAAATCTGCAT 14968 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | || | | | ||||| |||||||| || Sbjct 15228 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCAAGCTGCTTACC 15286 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| ||||||||||| |||||||| |||||| ||| Sbjct 15287 AGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 15346 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | |||||| |||| ||||| ||| || || || || || Sbjct 15347 GACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 15406 Query 133643 TTTTACGA 133650 || |||| Sbjct 15407 CTTGACGA 15414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| |||| || ||| ||| |||||| ||||||||||| || Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC-GTCCTCAAGCTGCTTGCCAGCAA 15063 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || |||||||| || || || || || |||||||| |||||| |||| | Sbjct 15064 AGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGATTTGACAT 15123 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 || | ||||| | | || || || | |||| ||| |||||||||| || || | Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183 Query 133648 CGAAAATCTGCAT 133660 |||| |||||||| Sbjct 15184 CGAAGATCTGCAT 15196 >seq23 Length=158060 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | || | ||||||||||| || || ||||| |||||| Sbjct 67429 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 67488 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 67489 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 67548 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 67549 GTCTTGCCCGTCAGGGTCTTCACGAAA 67575 >seq301 Length=43884 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | || | | | ||||| |||||||| | Sbjct 7537 GGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCA-TCCTCCAGCTGCTTAC 7595 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 7596 CAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 7655 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 7656 TGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 7715 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 7716 TCTTGACGAAAATCTGCAT 7734 >seq61 Length=119690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| |||| || ||| ||| ||| || |||||||| || ||||| || Sbjct 2945 TTCTGGATGTTGTAGTCGCTCAAGGTGTGACT-GTCTTCCAGCTGCTTACCAGCGTAGAT 2887 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || | ||||| || ||||| ||||| ||||| | || Sbjct 2886 CAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTTGTC 2827 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||||| | ||||| | || ||||| || |||||||| | || || ||||| Sbjct 2826 GATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGTCTTGACGAA 2767 Query 133652 AATCTGCAT 133660 |||||| || Sbjct 2766 AATCTGTAT 2758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411300781280