Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq236 87.8 4e-12 >seq236 Length=53426 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 || |||| ||| | ||||||||||| ||||||| | |||||| | || |||||| | Sbjct 5494 TTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATGTTGACCAGGGTGGTAACA 5553 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | ||| | ||||| ||||| ||||| |||||||| | || | ||||| ||| Sbjct 5554 AGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGAGTTCC 5613 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || || || || || || || ||||| | || || || || || ||| Sbjct 5614 TTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGACTTGTTCCTTGCTC 5673 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | |||||| | ||| | |||||||| |||||| Sbjct 5674 TCTGGATTCCCGATCTCTTCATGAAGCGTGTT 5705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186788896106692