Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq246 120 3e-22 seq330 93.3 4e-14 >seq246 Length=51316 Score = 120 bits (132), Expect = 3e-22 Identities = 343/517 (66%), Gaps = 33/517 (6%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| ||||||| |||||| | |||||||| ||||||||| || | ||| | | | Sbjct 23462 CCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCC 23403 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT--- 46877 | ||| ||||| |||| || || || ||||| || | | || ||| | | || Sbjct 23402 TTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGG--TATCTTCTTCAG-CGGTGCC 23346 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 |||||| |||| || | | || | ||| | ||||| || ||||| || ||| Sbjct 23345 TTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAAC 23286 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC 46991 ||| | ||||| || ||||| || || ||||| |||||||| || || || | || Sbjct 23285 GAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCAC 23226 Query 46992 ---AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGA 47047 |||| || | | | || ||| ||||| ||| ||| | | || Sbjct 23225 CTCAAGAACCGTGCTA----GCAA--------GGAGGTGATCCGTGA-CATCATCACTGA 23179 Query 47048 GGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCAT 47107 || || | || || ||||||| || || | ||| || ||| |||| |||| ||||| Sbjct 23178 TGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCAT 23119 Query 47108 GAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 47166 |||| | || || ||| | || ||||||||||| || ||||||||| | || | Sbjct 23118 GAACTC-CAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTC 23060 Query 47167 TCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCG 47225 | || |||| || || | || || || || ||||| || ||| | |||||||| Sbjct 23059 TAGG-CAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCT 23001 Query 47226 CTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262 |||| ||||| ||||| || |||||||| || |||| Sbjct 23000 CTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 22964 >seq330 Length=39978 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGA-CTCTTTTTGAATGTTGTAGTCGCTCATGG 131960 ||||| |||| ||||| || | || || ||| || || |||||||||||||||| || Sbjct 14747 ACGCAGACGCAGGACCAAGTGCA-GTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG 14805 Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020 | || ||||| ||||| ||||| | | |||| | ||||| || || ||||| |||| Sbjct 14806 TGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGC 14865 Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 | || || || ||| || || | | || | || |||| | ||||| |||| Sbjct 14866 CCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGA 14925 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||||||| || | |||||||||||| Sbjct 14926 GGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601834589920