Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq246 120 3e-22
seq330 93.3 4e-14
>seq246
Length=51316
Score = 120 bits (132), Expect = 3e-22
Identities = 343/517 (66%), Gaps = 33/517 (6%)
Strand=Plus/Minus
Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820
|| ||| ||||||| |||||| | |||||||| ||||||||| || | ||| | | |
Sbjct 23462 CCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCC 23403
Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT--- 46877
| ||| ||||| |||| || || || ||||| || | | || ||| | | ||
Sbjct 23402 TTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGG--TATCTTCTTCAG-CGGTGCC 23346
Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937
|||||| |||| || | | || | ||| | ||||| || ||||| || |||
Sbjct 23345 TTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAAC 23286
Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC 46991
||| | ||||| || ||||| || || ||||| |||||||| || || || | ||
Sbjct 23285 GAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCAC 23226
Query 46992 ---AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGA 47047
|||| || | | | || ||| ||||| ||| ||| | | ||
Sbjct 23225 CTCAAGAACCGTGCTA----GCAA--------GGAGGTGATCCGTGA-CATCATCACTGA 23179
Query 47048 GGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCAT 47107
|| || | || || ||||||| || || | ||| || ||| |||| |||| |||||
Sbjct 23178 TGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCAT 23119
Query 47108 GAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 47166
|||| | || || ||| | || ||||||||||| || ||||||||| | || |
Sbjct 23118 GAACTC-CAACCTGATGAAGCAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTC 23060
Query 47167 TCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCG 47225
| || |||| || || | || || || || ||||| || ||| | ||||||||
Sbjct 23059 TAGG-CAACGAGAAGATCTACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCT 23001
Query 47226 CTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262
|||| ||||| ||||| || |||||||| || ||||
Sbjct 23000 CTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCG 22964
>seq330
Length=39978
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGA-CTCTTTTTGAATGTTGTAGTCGCTCATGG 131960
||||| |||| ||||| || | || || ||| || || |||||||||||||||| ||
Sbjct 14747 ACGCAGACGCAGGACCAAGTGCA-GTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGG 14805
Query 131961 TACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGC 132020
| || ||||| ||||| ||||| | | |||| | ||||| || || ||||| ||||
Sbjct 14806 TGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGC 14865
Query 132021 CTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080
| || || || ||| || || | | || | || |||| | ||||| ||||
Sbjct 14866 CCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGA 14925
Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | || || || |||||||| || | ||||||||||||
Sbjct 14926 GGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476601834589920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |