Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq363 120 4e-22 >seq363 Length=36312 Score = 120 bits (132), Expect = 4e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCAC 146930 ||||| |||| |||||| || || || | | ||||||| | || || | || | Sbjct 13358 AATCTCCAGCTCGGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGAT 13417 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||||| || ||||||||| ||||| |||| | ||| | | || ||| || | Sbjct 13418 GTGGTCGATGTAGACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATC 13477 Query 146991 GGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCC 147050 | |||||| || | ||||| |||||||||| |||||||| ||||||||||||| || Sbjct 13478 GCACACGTGAGCGAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCC 13537 Query 147051 CAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||||||||||| | |||| |||||| |||||||| Sbjct 13538 GAGGCCCATGTCGCAGGACCGCTGGTATAGCTGGCA 13573 Score = 116 bits (128), Expect = 4e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCC-GCAGTCCACGTACCTGGCCCCAA 147289 ||||||||| ||||||| ||| |||||| | | ||| ||||||||| ||| |||| Sbjct 13775 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCA-TCCACGTACTCGGCGCCAA 13833 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 |||||| ||||||||||||||| || || |||||||| ||| || | ||| | | || Sbjct 13834 AGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGC 13893 Query 147350 CCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGG 147409 | | | | ||| |||||| ||||||| | | |||||||||| || || | || Sbjct 13894 CGACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACGTCGT 13953 Query 147410 AGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 ||| | |||| ||| |||| |||||||||||| ||||| Sbjct 13954 TGAGGGCGATAGAAGATGTGTTGCCCTCGATGAACCAGAGGAGCTC 13999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583476534460800