Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq246 235 8e-56
seq236 114 2e-19
seq1 86.0 9e-11
>seq246
Length=51316
Score = 235 bits (260), Expect = 8e-56
Identities = 389/546 (71%), Gaps = 23/546 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| ||||||||||| |||||||| ||||||||||| ||| | || |
Sbjct 23799 GATCTGGCAAATGTAC-AAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATC 23741
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | || | | | ||| ||| ||| || |||||| | ||||||
Sbjct 23740 TGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTACTTCATCT 23681
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||| ||||| ||| |||||| |||||||| || ||||||||||| ||
Sbjct 23680 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 23622
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | |||||||| | || ||||| || | || ||||| |||||||||
Sbjct 23621 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 23562
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069
|| || ||||||||||| || |||||||| || || |||||||||||| ||||| || |
Sbjct 23561 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 23502
Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129
| | | || | ||||||| |||||| || || | || | | | || ||||
Sbjct 23501 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGG 23444
Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186
|||||||||| || ||||||||| ||||| | ||| | ||||||| |||| ||
Sbjct 23443 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 23389
Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243
|| | |||||| | ||||||||| ||||| ||| ||| || || | | |||||||
Sbjct 23388 GGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 23331
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303
|||||||||||||| || |||||||| |||| | |||| |||||| | ||| |||
Sbjct 23330 TGGCTCAAGAAGCGAGGTCTCATGCCTGGTC-TGACCTTTTCCAACGAGCTCATCTCTCG 23272
Query 1456304 CGACGA 1456309
|||||
Sbjct 23271 TGACGA 23266
Score = 91.5 bits (100), Expect = 2e-12
Identities = 225/332 (68%), Gaps = 12/332 (4%)
Strand=Plus/Minus
Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGAC 1456506
||| ||||| |||||||||||| ||||| || | | | |||| || |||| | |
Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT---CACCTCAAGAA-CCGTGCTAG 23209
Query 1456507 C---GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563
| || ||| | | |||||| || || ||| || ||| | ||||| | |
Sbjct 23208 CAAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149
Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623
|||| | || || || || | ||||||||| ||| | || ||| ||||||||||
Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG 23090
Query 1456624 AATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC 1456683
| ||| || ||||| || ||||| | || || ||| || ||||| |||| | | ||
Sbjct 23089 AGTTT-GTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACG-AGAAGATCTACAAGTCTGC 23032
Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743
|||||| || | |||||| || || |||| |||||||||||||| ||||||
Sbjct 23031 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAA 22972
Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGTCA 1456774
||||| | ||| ||| ||||| || ||||
Sbjct 22971 GCGCGTCGCCGACTACCAGAAGGCTGGTGTCA 22940
>seq236
Length=53426
Score = 114 bits (126), Expect = 2e-19
Identities = 203/291 (70%), Gaps = 4/291 (1%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951
|||||| |||| ||| ||||| ||| || | ||||| || || || || || || |||
Sbjct 5255 CATGTCT-AGCAAGTTCTTCAC-TCATGCCTCTCCCACCCTGTTCAACGCAGGTACCCCG 5312
Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011
| | ||| || || ||||| || | |||||||||| |||| |||||||| |||
Sbjct 5313 CAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGATAGCATCGAGGGTATC 5372
Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071
|||||||| || ||| || || | || |||||| ||| || || ||||| || |
Sbjct 5373 TATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAAC 5432
Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131
| || | || ||| | ||| | ||| | || ||||||||||| || |||||
Sbjct 5433 GTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAACGGTACCTCTAACGGT 5492
Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| | ||||||||||| || || ||| |||| || | || || ||||||
Sbjct 5493 ATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATGTTGACCAG 5543
Score = 86.0 bits (94), Expect = 9e-11
Identities = 92/119 (77%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 262115 GCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGC 262174
||||| | |||||| || | |||| |||| |||||||||| ||| ||||| | |||
Sbjct 5865 GCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGC 5924
Query 262175 AACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232
|||||| |||||||||| |||| | ||| ||||||| ||||||||||| || |||
Sbjct 5925 AACCAGAAGAACCTGGGAACCATCCGCAGCT-CCAACCTCTGCACCGAGATTATCGAGT 5982
>seq1
Length=330970
Score = 86.0 bits (94), Expect = 9e-11
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 2133561 GAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCC 2133620
||||||||| |||| | ||||| | ||||| ||||||| ||||||||| |||||
Sbjct 123075 GAGATGGTGGTGGTGAAGAACATTGATGTGTTCTCACTGTGCGAACACCACCTGGTGCCC 123016
Query 2133621 TTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAG 2133680
|||| ||||||| ||| | |||||| | ||| ||| |||| || | ||||
Sbjct 123015 TTTACTGGCAAGGTCCATATTGGCTACATCCCCAACAACAACGTCATTGGCATCTCCAAG 122956
Query 2133681 ATCCCGCGCATCGTCGACATGTTTTCC 2133707
| || ||||| | |||||||||||||
Sbjct 122955 CTGCCTCGCATTGCCGACATGTTTTCC 122929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177659577710664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |