Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq246 235 8e-56 seq236 114 2e-19 seq1 86.0 9e-11 >seq246 Length=51316 Score = 235 bits (260), Expect = 8e-56 Identities = 389/546 (71%), Gaps = 23/546 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| ||||||||||| |||||||| ||||||||||| ||| | || | Sbjct 23799 GATCTGGCAAATGTAC-AAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATC 23741 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | | ||| ||| ||| || |||||| | |||||| Sbjct 23740 TGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTACTTCATCT 23681 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 23680 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 23622 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 23621 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 23562 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069 || || ||||||||||| || |||||||| || || |||||||||||| ||||| || | Sbjct 23561 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 23502 Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | || | ||||||| |||||| || || | || | | | || |||| Sbjct 23501 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGG 23444 Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| || ||||||||| ||||| | ||| | ||||||| |||| || Sbjct 23443 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 23389 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 || | |||||| | ||||||||| ||||| ||| ||| || || | | ||||||| Sbjct 23388 GGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 23331 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 |||||||||||||| || |||||||| |||| | |||| |||||| | ||| ||| Sbjct 23330 TGGCTCAAGAAGCGAGGTCTCATGCCTGGTC-TGACCTTTTCCAACGAGCTCATCTCTCG 23272 Query 1456304 CGACGA 1456309 ||||| Sbjct 23271 TGACGA 23266 Score = 91.5 bits (100), Expect = 2e-12 Identities = 225/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGAC 1456506 ||| ||||| |||||||||||| ||||| || | | | |||| || |||| | | Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCT---CACCTCAAGAA-CCGTGCTAG 23209 Query 1456507 C---GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAG 1456563 | || ||| | | |||||| || || ||| || ||| | ||||| | | Sbjct 23208 CAAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149 Query 1456564 CGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTG 1456623 |||| | || || || || | ||||||||| ||| | || ||| |||||||||| Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAAC-CTGATGAAGCAGTACATTG 23090 Query 1456624 AATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC 1456683 | ||| || ||||| || ||||| | || || ||| || ||||| |||| | | || Sbjct 23089 AGTTT-GTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACG-AGAAGATCTACAAGTCTGC 23032 Query 1456684 CAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCG 1456743 |||||| || | |||||| || || |||| |||||||||||||| |||||| Sbjct 23031 CAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAA 22972 Query 1456744 CCGCGT-GGCGAGTACGCCAAGGCCGGCGTCA 1456774 ||||| | ||| ||| ||||| || |||| Sbjct 22971 GCGCGTCGCCGACTACCAGAAGGCTGGTGTCA 22940 >seq236 Length=53426 Score = 114 bits (126), Expect = 2e-19 Identities = 203/291 (70%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 |||||| |||| ||| ||||| ||| || | ||||| || || || || || || ||| Sbjct 5255 CATGTCT-AGCAAGTTCTTCAC-TCATGCCTCTCCCACCCTGTTCAACGCAGGTACCCCG 5312 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | | ||| || || ||||| || | |||||||||| |||| |||||||| ||| Sbjct 5313 CAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGATAGCATCGAGGGTATC 5372 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 |||||||| || ||| || || | || |||||| ||| || || ||||| || | Sbjct 5373 TATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAAC 5432 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | || | || ||| | ||| | ||| | || ||||||||||| || ||||| Sbjct 5433 GTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAACGGTACCTCTAACGGT 5492 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || | ||||||||||| || || ||| |||| || | || || |||||| Sbjct 5493 ATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATGTTGACCAG 5543 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 262115 GCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGC 262174 ||||| | |||||| || | |||| |||| |||||||||| ||| ||||| | ||| Sbjct 5865 GCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGC 5924 Query 262175 AACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 |||||| |||||||||| |||| | ||| ||||||| ||||||||||| || ||| Sbjct 5925 AACCAGAAGAACCTGGGAACCATCCGCAGCT-CCAACCTCTGCACCGAGATTATCGAGT 5982 >seq1 Length=330970 Score = 86.0 bits (94), Expect = 9e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2133561 GAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCC 2133620 ||||||||| |||| | ||||| | ||||| ||||||| ||||||||| ||||| Sbjct 123075 GAGATGGTGGTGGTGAAGAACATTGATGTGTTCTCACTGTGCGAACACCACCTGGTGCCC 123016 Query 2133621 TTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAG 2133680 |||| ||||||| ||| | |||||| | ||| ||| |||| || | |||| Sbjct 123015 TTTACTGGCAAGGTCCATATTGGCTACATCCCCAACAACAACGTCATTGGCATCTCCAAG 122956 Query 2133681 ATCCCGCGCATCGTCGACATGTTTTCC 2133707 | || ||||| | ||||||||||||| Sbjct 122955 CTGCCTCGCATTGCCGACATGTTTTCC 122929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177659577710664