Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq236 134 2e-26
>seq236
Length=53426
Score = 134 bits (148), Expect = 2e-26
Identities = 402/612 (66%), Gaps = 14/612 (2%)
Strand=Plus/Minus
Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410
||| || ||||| || | ||| || ||||| ||| ||||| |||||||| || || ||
Sbjct 5948 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 5889
Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470
|| ||||||| || |||| | ||| | || || | ||| | | ||| ||
Sbjct 5888 GGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAAT 5829
Query 69471 TACGGTCTTGTAACG-CTTCTCTT--TTTCATATTGTGTATATA--GCCGTTCGAATTCA 69525
|||||| || | || || | || |||| ||| | ||| ||||| ||
Sbjct 5828 A---GTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCC--TCGAACTC- 5775
Query 69526 TCTCCCCAAA-CA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583
||| ||| | || ||| ||| ||||| ||||| || || ||||| | | ||| |
Sbjct 5774 -CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCA 5716
Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643
| | || ||| || ||||| || |||||||||||||| ||||| | || | || |
Sbjct 5715 AGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGC 5656
Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703
| | ||||| || || || || ||||| || ||||| | | || |
Sbjct 5655 GAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGG 5596
Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763
||||| || || || || || || | | | || || || || || || ||||| || |
Sbjct 5595 CGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAA 5536
Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823
|||||||||||||| || |||||| ||||| ||||||||||| ||||| |||| |
Sbjct 5535 CATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGT 5476
Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883
| || |||| ||| ||| || | || || || | | | || || || |
Sbjct 5475 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCAC 5416
Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943
| ||||| || || || | ||||| |||| |||||||| |||||||| |||||||
Sbjct 5415 CAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTAT 5356
Query 69944 CATCTATCATGT 69955
| || ||||||
Sbjct 5355 CGTCCTTCATGT 5344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686895302242080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |