Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq236 134 2e-26 >seq236 Length=53426 Score = 134 bits (148), Expect = 2e-26 Identities = 402/612 (66%), Gaps = 14/612 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || ||||| || | ||| || ||||| ||| ||||| |||||||| || || || Sbjct 5948 GATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 5889 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || ||||||| || |||| | ||| | || || | ||| | | ||| || Sbjct 5888 GGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAAT 5829 Query 69471 TACGGTCTTGTAACG-CTTCTCTT--TTTCATATTGTGTATATA--GCCGTTCGAATTCA 69525 |||||| || | || || | || |||| ||| | ||| ||||| || Sbjct 5828 A---GTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCC--TCGAACTC- 5775 Query 69526 TCTCCCCAAA-CA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 ||| ||| | || ||| ||| ||||| ||||| || || ||||| | | ||| | Sbjct 5774 -CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCA 5716 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 | | || ||| || ||||| || |||||||||||||| ||||| | || | || | Sbjct 5715 AGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGC 5656 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 | | ||||| || || || || ||||| || ||||| | | || | Sbjct 5655 GAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGG 5596 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 ||||| || || || || || || | | | || || || || || || ||||| || | Sbjct 5595 CGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAA 5536 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 |||||||||||||| || |||||| ||||| ||||||||||| ||||| |||| | Sbjct 5535 CATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGT 5476 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | || |||| ||| ||| || | || || || | | | || || || | Sbjct 5475 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCAC 5416 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | ||||| || || || | ||||| |||| |||||||| |||||||| ||||||| Sbjct 5415 CAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTAT 5356 Query 69944 CATCTATCATGT 69955 | || |||||| Sbjct 5355 CGTCCTTCATGT 5344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895302242080