Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq236 277 2e-69 seq246 118 1e-21 >seq236 Length=53426 Score = 277 bits (306), Expect = 2e-69 Identities = 1013/1560 (65%), Gaps = 51/1560 (3%) Strand=Plus/Minus Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA 110609 ||||||||| || ||||| | | || ||||| ||||| || | ||| || ||| Sbjct 6713 CTTGATATCTTCGGGGATGTTGGGAATGTTCTGAATGGAGCCGTTC----TCAGCAATGA 6658 Query 110610 GA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666 | | |||||| | | ||||||||| ||| | | ||||| |||| || Sbjct 6657 TACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGG 6598 Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 |||||||| ||||| || || ||| | || | |||||||||| | ||||| | Sbjct 6597 GGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 6538 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | || ||||| || || ||||||| || || | || ||| |||||||| || || | Sbjct 6537 GCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 6478 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 | | ||||| || ||| | ||||||||| | |||||||| ||||| || Sbjct 6477 GGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCC 6418 Query 110847 A--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904 | | | || ||||| || | |||||||||| || || || | || | ||| || || Sbjct 6417 ACAGGTCAGAG-GGTTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGG 6360 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCA 110963 || |||| || | ||| |||| ||| | | | || | || | || ||||| | Sbjct 6359 TGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCAA 6301 Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023 ||| || || || ||||| |||||||| | |||| || || || || | Sbjct 6300 GGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACT 6241 Query 111024 CAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 |||| |||| || |||| | || | || || ||||| || ||||| | || Sbjct 6240 CAAAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACGCC 6186 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 ||| |||| ||| |||||||| || || || || || || || || || Sbjct 6185 AATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATC 6126 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198 ||||| ||| || || | ||| | ||| |||| ||||||||| || | | | || Sbjct 6125 AATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTC 6066 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | | || | | || |||||| || ||||| | || ||||| |||||||| Sbjct 6065 ATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAAC 6006 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| |||||| | | |||||| | ||| || || || | |||||| || || Sbjct 6005 AGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGAT 5946 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| ||||| |||||| |||||||||||||||||| |||| Sbjct 5945 GGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGG 5886 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG-GCTGGTACA 111436 | || ||||| ||||| | || || || | | ||| | | || | | || || Sbjct 5885 GTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAATAGT 5826 Query 111437 ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 111496 | ||| | ||||||||| |||||| || || | || || |||||||| || Sbjct 5825 CTTGCG--ACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTC-GCC 5769 Query 111497 ACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTT 111554 | || ||| | || || || || || || || || | || | ||| | ||| || Sbjct 5768 ATAGCAGTCAGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTT 5712 Query 111555 C--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTAC 111611 | |||||| ||||||||||| || || |||||||| || | | | || || || | | Sbjct 5711 CTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCGCGAG 5653 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671 || ||||||| | || ||||| || | ||||||||||| | || || |||| Sbjct 5652 CGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGT 5593 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTA 111725 |||| ||||| || |||| || | | || ||||| ||| | || | | Sbjct 5592 GCCAAGGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAA 5536 Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785 |||| | || ||| ||| || || |||||||| ||||||||||| | || ||| | Sbjct 5535 CATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGT 5476 Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 | || || ||| ||| |||| | | ||||| || || || ||||| | Sbjct 5475 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCAC 5416 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 ||||| ||| || || ||||| | | ||||| |||||||||| | ||| | Sbjct 5415 CAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTAT 5356 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | ||||| || ||| | |||||| ||||| ||| | | || ||||| || |||| Sbjct 5355 CGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGA 5296 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023 | ||||| || | || ||| ||| | | |||| ||||| || ||||||||||| Sbjct 5295 ACAGGGTGGGAGAGGCATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 5238 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| |||||||| || || |||||| | | || ||||| | ||||| ||| || Sbjct 5237 GACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178 >seq246 Length=51316 Score = 118 bits (130), Expect = 1e-21 Identities = 348/524 (66%), Gaps = 13/524 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || || || || || ||| ||||| Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || | ||| ||||||||| Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| || ||||| |||| ||||| | ||| ||||| ||| ||| | | | Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA-AGAGTTCTTGTCCTGGA 23422 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896 ||| || || ||||| | |||||||| ||| || || | || | ||||| | | Sbjct 23423 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 23482 Query 122897 ATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954 | | | ||| | | | | || ||||| ||||| |||| || | || || || Sbjct 23483 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 23540 Query 122955 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013 ||| || | | | ||| ||| | || | ||||||| | || || ||| | Sbjct 23541 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGA 23599 Query 123014 TCTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072 |||| ||||| |||| || | | | ||||| ||||| ||||| || | Sbjct 23600 TCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 23658 Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129 |||||||| |||||||||| ||||| | ||| || | ||||||| || | ||| Sbjct 23659 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTC 23718 Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 || |||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 23719 CAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019659171200