Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq236 277 2e-69
seq246 118 1e-21
>seq236
Length=53426
Score = 277 bits (306), Expect = 2e-69
Identities = 1013/1560 (65%), Gaps = 51/1560 (3%)
Strand=Plus/Minus
Query 110551 CTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA-TGA 110609
||||||||| || ||||| | | || ||||| ||||| || | ||| || |||
Sbjct 6713 CTTGATATCTTCGGGGATGTTGGGAATGTTCTGAATGGAGCCGTTC----TCAGCAATGA 6658
Query 110610 GA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666
| | |||||| | | ||||||||| ||| | | ||||| |||| ||
Sbjct 6657 TACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGG 6598
Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726
|||||||| ||||| || || ||| | || | |||||||||| | ||||| |
Sbjct 6597 GGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGG 6538
Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786
| || ||||| || || ||||||| || || | || ||| |||||||| || || |
Sbjct 6537 GCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGA 6478
Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846
| | ||||| || ||| | ||||||||| | |||||||| ||||| ||
Sbjct 6477 GGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCC 6418
Query 110847 A--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGG 110904
| | | || ||||| || | |||||||||| || || || | || | ||| || ||
Sbjct 6417 ACAGGTCAGAG-GGTTTGACAT-CCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGG 6360
Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTC-ACAGCTCGCCTCCA 110963
|| |||| || | ||| |||| ||| | | | || | || | || ||||| |
Sbjct 6359 TGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAA-GCCTCAA 6301
Query 110964 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 111023
||| || || || ||||| |||||||| | |||| || || || || |
Sbjct 6300 GGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACT 6241
Query 111024 CAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078
|||| |||| || |||| | || | || || ||||| || ||||| | ||
Sbjct 6240 CAAAGGGCATGCGCAG-GGCA----AGGAAAGCGTCGGCAAGACCCTGGACACCAACGCC 6186
Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138
||| |||| ||| |||||||| || || || || || || || || ||
Sbjct 6185 AATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATC 6126
Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATC 111198
||||| ||| || || | ||| | ||| |||| ||||||||| || | | | ||
Sbjct 6125 AATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTC 6066
Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258
| | || | | || |||||| || ||||| | || ||||| ||||||||
Sbjct 6065 ATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAAC 6006
Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318
||| |||||| | | |||||| | ||| || || || | |||||| || ||
Sbjct 6005 AGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGAT 5946
Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378
|| |||| ||||| ||||| ||||| |||||| |||||||||||||||||| ||||
Sbjct 5945 GGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGG 5886
Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCG-GCTGGTACA 111436
| || ||||| ||||| | || || || | | ||| | | || | | || ||
Sbjct 5885 GTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAATAGT 5826
Query 111437 ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 111496
| ||| | ||||||||| |||||| || || | || || |||||||| ||
Sbjct 5825 CTTGCG--ACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTC-GCC 5769
Query 111497 ACCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTT 111554
| || ||| | || || || || || || || || | || | ||| | ||| ||
Sbjct 5768 ATAGCAGTCAGCCAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTT 5712
Query 111555 C--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTAC 111611
| |||||| ||||||||||| || || |||||||| || | | | || || || | |
Sbjct 5711 CTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG-TCGCGAG 5653
Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGT 111671
|| ||||||| | || ||||| || | ||||||||||| | || || ||||
Sbjct 5652 CGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGT 5593
Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTA 111725
|||| ||||| || |||| || | | || ||||| ||| | || | |
Sbjct 5592 GCCAAGGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAA 5536
Query 111726 CATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCAT 111785
|||| | || ||| ||| || || |||||||| ||||||||||| | || ||| |
Sbjct 5535 CATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGT 5476
Query 111786 TTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845
| || || ||| ||| |||| | | ||||| || || || ||||| |
Sbjct 5475 TGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCAC 5416
Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905
||||| ||| || || ||||| | | ||||| |||||||||| | ||| |
Sbjct 5415 CAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTAT 5356
Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965
| ||||| || ||| | |||||| ||||| ||| | | || ||||| || ||||
Sbjct 5355 CGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGA 5296
Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAA 112023
| ||||| || | || ||| ||| | | |||| ||||| || |||||||||||
Sbjct 5295 ACAGGGTGGGAGAGGCATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAG 5238
Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|||| |||||||| || || |||||| | | || ||||| | ||||| ||| ||
Sbjct 5237 GACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178
>seq246
Length=51316
Score = 118 bits (130), Expect = 1e-21
Identities = 348/524 (66%), Gaps = 13/524 (2%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||| |||||||| || || || || || || || || ||| |||||
Sbjct 23244 GGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACC 23303
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | ||| | || | | || | ||| |||||||||
Sbjct 23304 AGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 23363
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836
|||||| || ||||| |||| ||||| | ||| ||||| ||| ||| | | |
Sbjct 23364 ACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGA-AGAGTTCTTGTCCTGGA 23422
Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 122896
||| || || ||||| | |||||||| ||| || || | || | ||||| | |
Sbjct 23423 TCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGA 23482
Query 122897 ATAACT-GCTTC-TTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGT 122954
| | | ||| | | | | || ||||| ||||| |||| || | || || ||
Sbjct 23483 AGAGGTAGCTGCGCTGGCTGTTC--TCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGT 23540
Query 122955 TTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTA 123013
||| || | | | ||| ||| | || | ||||||| | || || ||| |
Sbjct 23541 CTCGGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCATCGAGCCTCGGGGA 23599
Query 123014 TCTGAACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCA 123072
|||| ||||| |||| || | | | ||||| ||||| ||||| || |
Sbjct 23600 TCTGGACCTC-GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCG 23658
Query 123073 GCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129
|||||||| |||||||||| ||||| | ||| || | ||||||| || | |||
Sbjct 23659 GCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTC 23718
Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
|| |||| ||||| ||||||| ||||| ||||| || |||||
Sbjct 23719 CAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628019659171200
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