Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq236 223 4e-53 seq246 123 3e-23 >seq236 Length=53426 Score = 223 bits (246), Expect = 4e-53 Identities = 1131/1779 (64%), Gaps = 49/1779 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| || || ||| ||||| | || ||||||||||| || |||||||| | Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||||| || | ||||| || | |||| | || ||| | |||| Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 6814 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 || ||||| ||||| ||||| ||||| || ||||| |||||||| | | || Sbjct 6813 GGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CA 6755 Query 117985 CATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040 || || ||| | ||||| || ||| |||| || ||| ||||| || ||| Sbjct 6754 -AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGG 6698 Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 118100 || | || || || ||||| || | | | || | | |||||| | | Sbjct 6697 ATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCG 6638 Query 118101 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAAC 118157 |||||||| ||| | | || |||| |||| || |||||||| ||| Sbjct 6637 GACCAGAGGCCAGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAACCTGGAAC 6581 Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217 || || || ||| |||| | | ||||| |||| ||||| ||||| |||||||| ||| Sbjct 6580 TCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTG 6521 Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 118277 ||||||| || |||| || ||| || ||||| || || | ||| | |||||| || Sbjct 6520 TTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGC 6461 Query 118278 AGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTT-GAGC-TTTG 118332 ||| | ||| | || | |||||||| | |||||| || | || ||| |||| Sbjct 6460 GTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTG 6401 Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392 | ||| |||| || || |||||||| || | ||| || || ||||||| |||| Sbjct 6400 ACATCCC-----ACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATG 6346 Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452 || || || ||||| |||| || | || ||||| ||||| || || || | Sbjct 6345 ATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGA 6286 Query 118453 TTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511 | || ||||| || | |||| || | | ||||| || ||||| | | || Sbjct 6285 TGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCATGCGC 6227 Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571 || || | || || ||||| |||||||| | |||||| || || || | |||| Sbjct 6226 AGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATA 6167 Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 || || || || || || || || || ||| || | | | || || || Sbjct 6166 TTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTG 6107 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691 | || ||||| |||| |||||||||||| | | ||| | | || | | | Sbjct 6106 CGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAA 6047 Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751 | |||||| ||| ||||| | || |||| || || |||| |||||| | || Sbjct 6046 TCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCA 5987 Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811 |||||| ||||| || ||||| | ||| || || ||||| |||| |||||| || Sbjct 5986 CAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGG 5927 Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871 || ||| ||| || ||||||||||| |||||| | || | || ||||| || ||| Sbjct 5926 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 5867 Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC 118930 | | || || | | ||| | | || | ||| | | ||| | | || ||||| Sbjct 5866 GCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGAATAGTCTTGCGACCACGTCCCTC 5808 Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 |||||| || || | || || ||||| || || | || | || || || Sbjct 5807 CCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGG 5748 Query 118991 TGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAA 119047 || || | ||||| | ||| | ||| | ||| || |||||| ||||||||||| Sbjct 5747 -GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAA 5691 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 ||| || || |||||||| || ||| | || ||| ||| | ||||| | || || Sbjct 5690 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5631 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || || | || | || || | || || |||||||| || || ||||| | || Sbjct 5630 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGC 5571 Query 119168 GATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221 | | || | |||| |||| |||||| ||||| || |||||| ||| || Sbjct 5570 AAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAA 5514 Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT 119281 || |||||||| ||||| ||||| | || || || || || ||| ||| Sbjct 5513 GACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 5454 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 |||| | || |||| || || || ||||| || ||| ||| || || || Sbjct 5453 GGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGC 5394 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 || | | ||| || | ||||| || ||||| || |||| | ||| | ||| Sbjct 5393 ACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAA 5334 Query 119402 GCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460 ||| |||| || ||| || || ||||| |||||||| || || || | || || Sbjct 5333 GCATGAGGACAGCTG-GGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAG 5275 Query 119461 TGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 ||| | | |||| ||||| || ||| ||||||| ||| |||||| || || Sbjct 5274 TGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCC 5217 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 || || | || || ||||||| ||||| ||||| Sbjct 5216 CCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178 >seq246 Length=51316 Score = 123 bits (136), Expect = 3e-23 Identities = 525/814 (64%), Gaps = 19/814 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| | || ||||||||||||||||| ||||| || | | || |||||||| Sbjct 22957 TAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATG 23016 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || | || | || | | | | || ||||| Sbjct 23017 AAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTAGAGCGACA-AGCAGACG 23075 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | || |||||||||||| |||| | ||||||||| || | ||| || Sbjct 23076 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCA 23135 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| ||| |||||| ||||| || | |||| | | Sbjct 23136 GGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACG 23195 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || |||| ||| || | | ||| | || | | || || |||||| || Sbjct 23196 GATCACCTCCTTGCTAGCACGGTTCTTGAGGTGAGAGTGCAGCAGG--CA-GGCAAAGTC 23252 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || || ||| |||||| |||||||| Sbjct 23253 AGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAG 23312 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 23313 ACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 23372 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 || || |||| || |||| |||||||| | ||| | | |||||| || Sbjct 23373 GGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGAT 23432 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-GTTCCT 130262 ||||| | ||||| || || || || | ||||| || || | |||| || || Sbjct 23433 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCT 23492 Query 130263 TC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321 | | ||| | || |||||||| | || ||||| || || || ||| ||| Sbjct 23493 GCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 23550 Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380 | | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 23551 ATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTC 23609 Query 130381 ATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 130439 | || || | | | ||||| ||||| ||||| || | ||||| || | Sbjct 23610 -GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGG 23668 Query 130440 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAA 130496 ||||||| | ||||| | || || | || |||| || | ||||| |||| | Sbjct 23669 CCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCA 23728 Query 130497 GATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||||| || ||||| | ||| || || ||||| Sbjct 23729 GATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423047748320