Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq236 223 4e-53
seq246 123 3e-23
>seq236
Length=53426
Score = 223 bits (246), Expect = 4e-53
Identities = 1131/1779 (64%), Gaps = 49/1779 (3%)
Strand=Plus/Minus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| || || ||| ||||| | || ||||||||||| || |||||||| |
Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||||| || | ||||| || | |||| | || ||| | ||||
Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGT 6814
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
|| ||||| ||||| ||||| ||||| || ||||| |||||||| | | ||
Sbjct 6813 GGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CA 6755
Query 117985 CATCCTTCATCTTGA----TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGG 118040
|| || ||| | ||||| || ||| |||| || ||| ||||| || |||
Sbjct 6754 -AT--TTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGG 6698
Query 118041 ATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTT 118100
|| | || || || ||||| || | | | || | | |||||| | |
Sbjct 6697 ATGTTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCG 6638
Query 118101 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTA---TTGACAACAACAAAC 118157
|||||||| ||| | | || |||| |||| || |||||||| |||
Sbjct 6637 GACCAGAGGCCAGTGTCGACCAGGTCCTT---GAGAAGCCAGGGGTTGACAACCTGGAAC 6581
Query 118158 TCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTG 118217
|| || || ||| |||| | | ||||| |||| ||||| ||||| |||||||| |||
Sbjct 6580 TCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTG 6521
Query 118218 TTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGG 118277
||||||| || |||| || ||| || ||||| || || | ||| | |||||| ||
Sbjct 6520 TTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGC 6461
Query 118278 AGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTT-GAGC-TTTG 118332
||| | ||| | || | |||||||| | |||||| || | || ||| ||||
Sbjct 6460 GTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTG 6401
Query 118333 TCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 118392
| ||| |||| || || |||||||| || | ||| || || ||||||| ||||
Sbjct 6400 ACATCCC-----ACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATG 6346
Query 118393 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 118452
|| || || ||||| |||| || | || ||||| ||||| || || || |
Sbjct 6345 ATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGA 6286
Query 118453 TTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGG 118511
| || ||||| || | |||| || | | ||||| || ||||| | | ||
Sbjct 6285 TGGTCTCAAAGATCTGCTTGTTCAGCTGACGAG-CCTCGGGAGACTCAAAGGGCATGCGC 6227
Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571
|| || | || || ||||| |||||||| | |||||| || || || | ||||
Sbjct 6226 AGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATA 6167
Query 118572 TTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631
|| || || || || || || || || ||| || | | | || || ||
Sbjct 6166 TTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTG 6107
Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 118691
| || ||||| |||| |||||||||||| | | ||| | | || | | |
Sbjct 6106 CGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAA 6047
Query 118692 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 118751
| |||||| ||| ||||| | || |||| || || |||| |||||| | ||
Sbjct 6046 TCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCA 5987
Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 118811
|||||| ||||| || ||||| | ||| || || ||||| |||| |||||| ||
Sbjct 5986 CAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGG 5927
Query 118812 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 118871
|| ||| ||| || ||||||||||| |||||| | || | || ||||| || |||
Sbjct 5926 TTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 5867
Query 118872 GACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTC 118930
| | || || | | ||| | | || | ||| | | ||| | | || |||||
Sbjct 5866 GCTTCCAGGATGGAATACCACAGCTTCTG-AGCGCGAATAGTCTTGCGACCACGTCCCTC 5808
Query 118931 TTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990
|||||| || || | || || ||||| || || | || | || || ||
Sbjct 5807 CCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGG 5748
Query 118991 TGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCA--CCCTCCTCAACCCGCTTCATGAA 119047
|| || | ||||| | ||| | ||| | ||| || |||||| |||||||||||
Sbjct 5747 -GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCTTCTCAACACGCTTCATGAA 5691
Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107
||| || || |||||||| || ||| | || ||| ||| | ||||| | || ||
Sbjct 5690 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5631
Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167
|| || | || | || || | || || |||||||| || || ||||| | ||
Sbjct 5630 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGC 5571
Query 119168 GATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221
| | || | |||| |||| |||||| ||||| || |||||| ||| ||
Sbjct 5570 AAAGGCACC---AGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAA 5514
Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT 119281
|| |||||||| ||||| ||||| | || || || || || ||| |||
Sbjct 5513 GACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCC 5454
Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341
|||| | || |||| || || || ||||| || ||| ||| || || ||
Sbjct 5453 GGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGC 5394
Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401
|| | | ||| || | ||||| || ||||| || |||| | ||| | |||
Sbjct 5393 ACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAA 5334
Query 119402 GCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGA 119460
||| |||| || ||| || || ||||| |||||||| || || || | || ||
Sbjct 5333 GCATGAGGACAGCTG-GGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAG 5275
Query 119461 TGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518
||| | | |||| ||||| || ||| ||||||| ||| |||||| || ||
Sbjct 5274 TGA--AGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCC 5217
Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557
|| || | || || ||||||| ||||| |||||
Sbjct 5216 CCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGG 5178
>seq246
Length=51316
Score = 123 bits (136), Expect = 3e-23
Identities = 525/814 (64%), Gaps = 19/814 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| | || ||||||||||||||||| ||||| || | | || ||||||||
Sbjct 22957 TAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATG 23016
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || | || | || | | | | || |||||
Sbjct 23017 AAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCTAGAGCGACA-AGCAGACG 23075
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||| | || |||||||||||| |||| | ||||||||| || | ||| ||
Sbjct 23076 ATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCA 23135
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||| || || | |||| ||| |||||| ||||| || | |||| | |
Sbjct 23136 GGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACG 23195
Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|| |||| ||| || | | ||| | || | | || || |||||| ||
Sbjct 23196 GATCACCTCCTTGCTAGCACGGTTCTTGAGGTGAGAGTGCAGCAGG--CA-GGCAAAGTC 23252
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| |||||||| || || || ||| |||||| ||||||||
Sbjct 23253 AGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAG 23312
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | ||| | || ||||||||| ||||| ||
Sbjct 23313 ACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 23372
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203
|| || |||| || |||| |||||||| | ||| | | |||||| ||
Sbjct 23373 GGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGAT 23432
Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-GTTCCT 130262
||||| | ||||| || || || || | ||||| || || | |||| || ||
Sbjct 23433 GGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCT 23492
Query 130263 TC-TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321
| | ||| | || |||||||| | || ||||| || || || ||| |||
Sbjct 23493 GCGCTGGCTGTT--CTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGG 23550
Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380
| | | ||| || | ||| | ||||||| | || || ||| ||||| |||||
Sbjct 23551 ATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTC 23609
Query 130381 ATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 130439
| || || | | | ||||| ||||| ||||| || | ||||| || |
Sbjct 23610 -GCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGG 23668
Query 130440 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAA 130496
||||||| | ||||| | || || | || |||| || | ||||| |||| |
Sbjct 23669 CCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCA 23728
Query 130497 GATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
||||||| || ||||| | ||| || || |||||
Sbjct 23729 GATCCTTGGACAGATCAATCTCTTCGGCGGTCCA 23762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618423047748320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |