Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq236 273 3e-68
seq246 167 3e-36
seq24 100 3e-16
>seq236
Length=53426
Score = 273 bits (302), Expect = 3e-68
Identities = 1155/1789 (65%), Gaps = 69/1789 (4%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| | ||||| ||| | | || || || || |||||||| ||||
Sbjct 5178 CCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5237
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
||||||||||| || ||||| |||| | | ||| ||| || | || ||||| |
Sbjct 5238 CTGGAGACATACAACCTCATGTCTAGCAAGTTCT--TCACTCATGCCTCTCCCACCCTGT 5295
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || | |||| ||||| |||||| | ||| || ||||| |
Sbjct 5296 TCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACG 5355
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
| ||| | |||||||||| ||||| | | ||||| || || ||| |||||
Sbjct 5356 ATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTG 5415
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| ||||| || || || ||||| | | |||| ||| ||| || || |
Sbjct 5416 GTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 5475
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| ||| || | ||||||||||| |||||||| || || ||| ||| || | ||||
Sbjct 5476 ACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATG 5535
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| | || | ||| ||||| || | | || |||| || ||||| ||||
Sbjct 5536 TTGACCAGGGTGGTAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCTTGGC 5592
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691
|||| || || | ||||||||||| | || ||||| || | || |||| ||||
Sbjct 5593 ACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 5652
Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751
| ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| |
Sbjct 5653 CT--CGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAA 5710
Query 104752 GAG--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCG 104807
|| ||| | ||| | ||| | || || || || || ||||| || | || |||
Sbjct 5711 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCTGACTGCTA 5767
Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865
||| |||||||| || || | || || |||||| || || || | | | ||
Sbjct 5768 TGGC-GAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTG-GTC-GCAA 5824
Query 104866 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924
||| | | ||| | || | ||||| | | || || | | || |||||||||||||
Sbjct 5825 GACTATTCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTA 5883
Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984
|| | |||||| ||||| || ||||| |||| ||||| || || ||||| ||||
Sbjct 5884 ACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 5943
Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044
||| || ||||| ||||| || || || | || | | ||||||| |
Sbjct 5944 CCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTG 6003
Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA- 105103
|||| || ||| | || || | || ||||| ||||| ||| | | || ||| |
Sbjct 6004 CTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGATT-ACA-ACGAAGGCTG 6061
Query 105104 -TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162
| ||| | | | || || || ||||| || || || | ||||| |||| |
Sbjct 6062 CTATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGGTTGTCCGCAACCTCAACAAGAT 6121
Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222
|||||| || ||||| || || || || || |||||| | ||||| ||
Sbjct 6122 CATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATATGCGCCACCGACC 6181
Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 105281
||||| | ||||| |||||||| || || | ||| || | || ||| | ||||
Sbjct 6182 CATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTTG 6240
Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341
| || ||| || | | || || || ||||||||||| || || || || |
Sbjct 6241 AGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGCCC 6300
Query 105342 TTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401
||||||| | ||| | || |||| || ||||| || ||| | || |||| || |
Sbjct 6301 TTGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATCAC 6360
Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCAC--- 105457
| || || | || | || ||||| || ||||||| | || | ||| || | ||
Sbjct 6361 CTGCATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAACC---CTCTGACCTG 6416
Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517
| || ||||| | |||||||| | ||||||||| | ||| || ||||| | |||
Sbjct 6417 TGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTC 6476
Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577
| || || |||||||| ||| || | || || ||||||| || || ||||| ||
Sbjct 6477 CTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGAG 6536
Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA- 105636
|||||||| | |||||||| | | || | ||| || || ||||| | |||||||
Sbjct 6537 CCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 6596
Query 105637 --CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA- 105693
| || |||| | ||||| || | ||| ||||||||| | | |||||| |
Sbjct 6597 CCCTGGCTTCTC---AAGGACCTGGTCGACACTGGCCTCTGGTCCGATGCCATGAAGAAC 6653
Query 105694 --TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAAT 105750
| ||| || ||| | | || |||||||| || ||| | || || | || ||
Sbjct 6654 CGTATCATTGCTGAGAAC----GGCTCCATTCAGAACATTCCCAACATCCCCGAAGATAT 6709
Query 105751 TAAGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGC 105807
||| | ||| || || ||||| || || | |||| | |||||
Sbjct 6710 CAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATTGTC---CAGATGGC 6766
Query 105808 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGT 105865
|| ||||||||| |||||||||| |||| ||| |||| || |||| | |
Sbjct 6767 GGCTGATCGTGGTGCTTTCATTGATC--AGTCCCAGTCCCTGAACATCCACATGAAGGAT 6824
Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925
|| || ||| |||| | | |||||| | | |||||| |||||||| ||
Sbjct 6825 CCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACC 6884
Query 105926 GGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 105974
|| ||||| ||||| || || |||| ||| || || |||||||
Sbjct 6885 GGCATGTACTACCTGCGTACTCAGGCCGCGGCTGCTCCTATCCAGTTCA 6933
>seq246
Length=51316
Score = 167 bits (184), Expect = 3e-36
Identities = 358/523 (68%), Gaps = 13/523 (2%)
Strand=Plus/Minus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
||||| || |||||| | ||||| || |||||| || |||||||||| | | | |||
Sbjct 23762 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAAT 23703
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| | || ||| | ||||| |||||||||| |||||||| | || ||||| |||
Sbjct 23702 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 23643
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616
|| ||||| | | ||| | ||||| || |||| | || || |||
Sbjct 23642 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 23584
Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675
|||||| | | ||| |||| ||| | | | || ||||| ||| ||||
Sbjct 23583 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 23525
Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733
| |||| || || ||||| | | | | | ||| | ||||| | ||||| | ||
Sbjct 23524 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 23467
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792
|||| || |||| ||||| || || ||||| || |||||| | | |||| | |
Sbjct 23466 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 23407
Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
||||||||| |||| || | || ||||| || ||||||||||||||| |||
Sbjct 23406 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTG 23348
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
|||| | | || | |||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 23347 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 23288
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||| ||||||||||||||||| || ||| || |||||
Sbjct 23287 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 23245
>seq24
Length=157561
Score = 100 bits (110), Expect = 3e-16
Identities = 182/261 (70%), Gaps = 8/261 (3%)
Strand=Plus/Minus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
|| || || || |||||||||| |||||| ||| ||| | ||| | | | || |
Sbjct 125035 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCTTCAGCGAACAAG 124976
Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822
|| | ||||| | ||||||||||||||||||||||| || | | || ||
Sbjct 124975 TCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGATCCGCTCACG 124916
Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882
|| | ||| || || ||| || || ||| | || ||||||||||||||| || ||
Sbjct 124915 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 124857
Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 9939
||||| || ||||| | ||||||||| ||||||||||| || |||| |||| |
Sbjct 124856 TCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT- 124798
Query 9940 TCTCTCAGGTTGCTTAAGAAA 9960
|||| |||||||| || ||
Sbjct 124797 --TCTCGGGTTGCTTCAGGAA 124779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583249338925280
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