Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq236 273 3e-68 seq246 167 3e-36 seq24 100 3e-16 >seq236 Length=53426 Score = 273 bits (302), Expect = 3e-68 Identities = 1155/1789 (65%), Gaps = 69/1789 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| ||| | | || || || || |||||||| |||| Sbjct 5178 CCCCAGCACATGATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 5237 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 ||||||||||| || ||||| |||| | | ||| ||| || | || ||||| | Sbjct 5238 CTGGAGACATACAACCTCATGTCTAGCAAGTTCT--TCACTCATGCCTCTCCCACCCTGT 5295 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | |||| ||||| |||||| | ||| || ||||| | Sbjct 5296 TCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACG 5355 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | ||| | |||||||||| ||||| | | ||||| || || ||| ||||| Sbjct 5356 ATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTG 5415 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || || || ||||| | | |||| ||| ||| || || | Sbjct 5416 GTGGTATCGGCTTGAACGTCCATCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCA 5475 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | ||||||||||| |||||||| || || ||| ||| || | |||| Sbjct 5476 ACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACTGCCAGATATG 5535 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || | | || |||| || ||||| |||| Sbjct 5536 TTGACCAGGGTGGTAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCTTGGC 5592 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCG 104691 |||| || || | ||||||||||| | || ||||| || | || |||| |||| Sbjct 5593 ACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCG 5652 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | ||||| | ||| |||||||||||||| ||||||||||||||| | |||||| | Sbjct 5653 CT--CGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGAA 5710 Query 104752 GAG--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGA-TGCCG 104807 || ||| | ||| | ||| | || || || || || ||||| || | || ||| Sbjct 5711 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTGGCTGACTGCTA 5767 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-- 104865 ||| |||||||| || || | || || |||||| || || || | | | || Sbjct 5768 TGGC-GAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTG-GTC-GCAA 5824 Query 104866 GACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 ||| | | ||| | || | ||||| | | || || | | || ||||||||||||| Sbjct 5825 GACTATTCGCGCT-CAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTA 5883 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| ||||| || ||||| |||| ||||| || || ||||| |||| Sbjct 5884 ACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 5943 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||| || ||||| ||||| || || || | || | | ||||||| | Sbjct 5944 CCATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTG 6003 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA- 105103 |||| || ||| | || || | || ||||| ||||| ||| | | || ||| | Sbjct 6004 CTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTTATGTCGATT-ACA-ACGAAGGCTG 6061 Query 105104 -TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | ||| | | | || || || ||||| || || || | ||||| |||| | Sbjct 6062 CTATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGGTTGTCCGCAACCTCAACAAGAT 6121 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||||| || ||||| || || || || || |||||| | ||||| || Sbjct 6122 CATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCAACAGCAATATGCGCCACCGACC 6181 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 105281 ||||| | ||||| |||||||| || || | ||| || | || ||| | |||| Sbjct 6182 CATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCCTTGCCCTG-CGCATGCCCTTTG 6240 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || ||| || | | || || || ||||||||||| || || || || | Sbjct 6241 AGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCATGCGGCCC 6300 Query 105342 TTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 ||||||| | ||| | || |||| || ||||| || ||| | || |||| || | Sbjct 6301 TTGAGGCTTCTATGGAGATCGCCAAGGTGGAGGGTCCCTACGAATCATTCAAGGGATCAC 6360 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-TCAC--- 105457 | || || | || | || ||||| || ||||||| | || | ||| || | || Sbjct 6361 CTGCATCCGAGGGCATCCTCCAATTCGACATGTGGG-ATGTCAAACC---CTCTGACCTG 6416 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | || ||||| | |||||||| | ||||||||| | ||| || ||||| | ||| Sbjct 6417 TGGGAGTGGGACTCGCTCAAGGAGCAGATCAAGGAGCACGGTACGCGCAACAGCTTGCTC 6476 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | || || |||||||| ||| || | || || ||||||| || || ||||| || Sbjct 6477 CTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAACAACGAGTGCTTCGAG 6536 Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA- 105636 |||||||| | |||||||| | | || | ||| || || ||||| | ||||||| Sbjct 6537 CCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAAC 6596 Query 105637 --CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA- 105693 | || |||| | ||||| || | ||| ||||||||| | | |||||| | Sbjct 6597 CCCTGGCTTCTC---AAGGACCTGGTCGACACTGGCCTCTGGTCCGATGCCATGAAGAAC 6653 Query 105694 --TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAAT 105750 | ||| || ||| | | || |||||||| || ||| | || || | || || Sbjct 6654 CGTATCATTGCTGAGAAC----GGCTCCATTCAGAACATTCCCAACATCCCCGAAGATAT 6709 Query 105751 TAAGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGC 105807 ||| | ||| || || ||||| || || | |||| | ||||| Sbjct 6710 CAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAAATTGTC---CAGATGGC 6766 Query 105808 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGT 105865 || ||||||||| |||||||||| |||| ||| |||| || |||| | | Sbjct 6767 GGCTGATCGTGGTGCTTTCATTGATC--AGTCCCAGTCCCTGAACATCCACATGAAGGAT 6824 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 || || ||| |||| | | |||||| | | |||||| |||||||| || Sbjct 6825 CCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTGGTCTCAAGACC 6884 Query 105926 GGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 105974 || ||||| ||||| || || |||| ||| || || ||||||| Sbjct 6885 GGCATGTACTACCTGCGTACTCAGGCCGCGGCTGCTCCTATCCAGTTCA 6933 >seq246 Length=51316 Score = 167 bits (184), Expect = 3e-36 Identities = 358/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| | ||||| || |||||| || |||||||||| | | | ||| Sbjct 23762 TGGACCGCCGAAGAGATTGATCTGTCCAAGGATCTGCACGATTGGAATAACCGCCTGAAT 23703 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || ||| | ||||| |||||||||| |||||||| | || ||||| ||| Sbjct 23702 GATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATT 23643 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | ||| | ||||| || |||| | || || ||| Sbjct 23642 GTCAACGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCC-GAGGCTCGATG 23584 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || ||||| ||| |||| Sbjct 23583 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCA 23525 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA-GAAGC-AGCTCTTTGAAGCCATCCAAAC 94733 | |||| || || ||||| | | | | | ||| | ||||| | ||||| | || Sbjct 23524 TCGACACCTACATCAAGGA--GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGAC 23467 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 94792 |||| || |||| ||||| || || ||||| || |||||| | | |||| | | Sbjct 23466 CATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTC 23407 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||||| |||| || | || ||||| || ||||||||||||||| ||| Sbjct 23406 -TTCCTTTGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTG 23348 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 |||| | | || | |||||||||||||||||||||||||| ||||| ||| |||| Sbjct 23347 CCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCA 23288 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 23287 ACGAGCTCATCTCTCGTGACGAGGGTCTGCACACTGACTTTGC 23245 >seq24 Length=157561 Score = 100 bits (110), Expect = 3e-16 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || || || || |||||||||| |||||| ||| ||| | ||| | | | || | Sbjct 125035 GCGTCGATTTCGTCAATGAAGATGATGCAAGGTGCATTCTTTCGACCTTCAGCGAACAAG 124976 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || | ||||| | ||||||||||||||||||||||| || | | || || Sbjct 124975 TCTCTCACACGAGAAGGACCCACACCAACAAACATCTCCACGAACTCAGATCCGCTCACG 124916 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || | ||| || || ||| || || ||| | || ||||||||||||||| || || Sbjct 124915 CTGAA-GAAAGGCACGCCAGACTCTCCAGCAGTAGCCTTGGCGAGAAGAGTCTTTCCTGT 124857 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGTA 9939 ||||| || ||||| | ||||||||| ||||||||||| || |||| |||| | Sbjct 124856 TCCTGGTGGGCCGGCGAGAATGGCACCTCGAGGAATCTTGGCACCCAGCTTCTCAAACT- 124798 Query 9940 TCTCTCAGGTTGCTTAAGAAA 9960 |||| |||||||| || || Sbjct 124797 --TCTCGGGTTGCTTCAGGAA 124779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249338925280