Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq330 138 3e-27 seq289 127 6e-24 seq301 114 4e-20 seq428 95.1 4e-14 >seq330 Length=39978 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| ||||| || ||| || || || || || || Sbjct 14966 CATACCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTC 15025 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || || ||||| || || ||||||||||| ||||| |||||||| || Sbjct 15026 GCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGG 15085 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | ||| ||||| || || | || |||| ||| Sbjct 15086 GGGAATACCCTCCTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTC 15145 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | ||| | ||||| ||||| | || || || || |||||||| Sbjct 15146 AACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 15480 CATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 15539 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 15540 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 15599 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| |||||||| || || | || ||||| || || | ||| || | || Sbjct 15600 AGGAATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTC 15659 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 15660 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710 Score = 129 bits (142), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || || || || || || Sbjct 15194 CATACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 15253 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 15254 GGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGG 15313 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | |||||||| || Sbjct 15314 AGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTC 15373 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | |||||||| || || || || || Sbjct 15374 CACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGAC 15412 Score = 109 bits (120), Expect = 2e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | || || | || || || ||| || || || || | Sbjct 14734 TTTACTGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGT 14793 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || || || ||||||||||| | || ||||| | Sbjct 14794 AGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGT 14853 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || | || || || || || | || || | Sbjct 14854 CAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 14913 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | |||||| ||||| || || || || ||||||||||| Sbjct 14914 ATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 >seq289 Length=45676 Score = 127 bits (140), Expect = 6e-24 Identities = 222/322 (69%), Gaps = 1/322 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || ||||| || || || ||||||| || || || || || Sbjct 27678 GCCGTCATCACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 27619 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || || || ||||| || || Sbjct 27618 GGTCTCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCTACCGCTGCTGCCATC 27559 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 27558 GCCTACGGCCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGT 27499 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 27498 GGTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 27439 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||| ||||| || || | ||||| |||||||| ||||| || || || || ||| Sbjct 27438 ACTGCCGGTGACACTCACTTGGGTGGTGAAGATTTCGATAACCGCCTTGTCAACCACTTT 27379 Query 349910 GTTAAAGAATTTAAGCGTCAAG 349931 ||||| ||||||||||| |||| Sbjct 27378 GTTAACGAATTTAAGCG-CAAG 27358 >seq301 Length=43884 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || |||||||| || || || || || || || Sbjct 7507 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 7566 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 7567 GAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 7626 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || ||||| || || | || || | || || Sbjct 7627 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 7686 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 7687 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 >seq428 Length=31006 Score = 95.1 bits (104), Expect = 4e-14 Identities = 101/133 (76%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| |||| || ||| || || | ||||| |||||||| || || || Sbjct 20055 CGGGGCACACCGAGTGTGACGTTC---TTGGAAGAGACACCGGCAAAGTGAAAGGTGTTC 20111 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | |||||||||||| ||||| || |||| ||||||||||||||| Sbjct 20112 AGCGTCATCTGCGTGGCGGGCTCACCAATGGACTGGGCGGCAAGAACGCCAACCATTTCA 20171 Query 377578 CCAGGATTGACAA 377590 || || || |||| Sbjct 20172 CCGGGGTTAACAA 20184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515223880882316