Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq236 223 4e-53 seq452 105 7e-18 >seq236 Length=53426 Score = 223 bits (246), Expect = 4e-53 Identities = 386/555 (70%), Gaps = 12/555 (2%) Strand=Plus/Plus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289 |||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | || Sbjct 5231 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACTCATGCCTCTCC 5287 Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349 |||||||||||||| ||||| || | ||| |||| |||||| |||| | || Sbjct 5288 CACCCTGTTCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACAT 5347 Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409 |||||| || ||||| || ||||| || || || ||| |||||| || ||||| Sbjct 5348 GAAGGACGATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAA 5407 Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATC 53467 | | | ||||||||||| | || | ||| | ||||||| | |||| | || Sbjct 5408 GATGGCTGGTGGTATCGGCTTGAACGTCCATCGCA--TCCGTGCCACCGGCTCTTACATT 5465 Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527 || || ||||| | | | || || | || ||||| || |||||||||||||| Sbjct 5466 GCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACT 5525 Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587 ||| | || || ||||||||||| ||||| || | || ||||||||||||||| Sbjct 5526 GCCAGATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAG 5585 Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 || |||||||||||| | | ||||| || || || || ||| || || | |||||| Sbjct 5586 CCTTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAG 5645 Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 | ||| || ||| |||| ||||| |||||||| || ||||||||| | || Sbjct 5646 GTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTT 5705 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766 |||||| || ||| ||| || |||||||| ||||| ||||| ||||| | | || Sbjct 5706 GAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTGGCTGACTG- 5764 Query 53767 CTACGGTGAGGAGTT 53781 ||| || |||||||| Sbjct 5765 CTATGGCGAGGAGTT 5779 Score = 118 bits (130), Expect = 1e-21 Identities = 301/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||| | || || |||||||| || ||| | ||||| |||| ||| Sbjct 6462 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAAC 6521 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||| || ||| || || ||| Sbjct 6522 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 6581 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||||||| | | | ||| ||| Sbjct 6582 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGT--CCG 6639 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGA 55715 | || |||| || || |||| |||||| ||| | ||||| || | | Sbjct 6640 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATTCCCAACA 6696 Query 55716 TTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 | || | |||||| ||||| ||| || ||||||||| | ||| | | | Sbjct 6697 TCCCCGAAGATATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 6753 Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| |||||||||||||| | ||| || ||||||||||| ||||||||| Sbjct 6754 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 6813 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 |||| || |||| || ||| |||| | | | |||||||| || |||||| | Sbjct 6814 ACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 6873 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | |||||||| || |||||||| ||||| || Sbjct 6874 GTCTCAAGACCGGCATGTACTACCTGCGTAC 6904 >seq452 Length=28303 Score = 105 bits (116), Expect = 7e-18 Identities = 187/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| || |||||| | || || | ||||| ||||| |||||| || || || | || Sbjct 8873 CAAGCGGGTGAAGGTATAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGAGAACC 8932 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| | || |||||| | | |||| |||||||| ||||| |||| || |||| Sbjct 8933 AAAGTTACCGCTGGGCTCCAAAACATTGATGTTGTTGGATCCCACAAAATCTTGGGCCAG 8992 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | ||| || ||||||| |||||||||||||| || || ||| | | | || Sbjct 8993 TCCGATAATGGTTTGCTGCAGAGAGGCTTCACCGTGGTGGTAGGCAGTCAGTCCGGAGAC 9052 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || |||| || | | ||||| |||| | || |||| |||||| ||| ||||| Sbjct 9053 ATAACCAGCCAGCTCCACAACCTTTTCGTCCTTGACCACGTTCCTCTTGAAACATGCGTA 9112 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | |||||| ||||| || ||||| || || Sbjct 9113 GAGCACCTTTCGCTGACCGGGCTTCAATCCATC 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205247205600