Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq236 223 4e-53
seq452 105 7e-18
>seq236
Length=53426
Score = 223 bits (246), Expect = 4e-53
Identities = 386/555 (70%), Gaps = 12/555 (2%)
Strand=Plus/Plus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289
|||||||| ||||| ||| || | ||| ||| |||| ||| || || ||| | ||
Sbjct 5231 GCGTGTCCTGGAGACATACAACCTCATGTCTAGC---AAGTTCTTCACTCATGCCTCTCC 5287
Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349
|||||||||||||| ||||| || | ||| |||| |||||| |||| | ||
Sbjct 5288 CACCCTGTTCAACGCAGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACAT 5347
Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409
|||||| || ||||| || ||||| || || || ||| |||||| || |||||
Sbjct 5348 GAAGGACGATAGCATCGAGGGTATCTATGACACTCTGAAGACATGTGCCATGATTTCCAA 5407
Query 53410 GTGGTCGGGTGGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATC 53467
| | | ||||||||||| | || | ||| | ||||||| | |||| | ||
Sbjct 5408 GATGGCTGGTGGTATCGGCTTGAACGTCCATCGCA--TCCGTGCCACCGGCTCTTACATT 5465
Query 53468 AAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACG 53527
|| || ||||| | | | || || | || ||||| || ||||||||||||||
Sbjct 5466 GCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTCTTCAACAACACT 5525
Query 53528 GCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAG 53587
||| | || || ||||||||||| ||||| || | || |||||||||||||||
Sbjct 5526 GCCAGATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAG 5585
Query 53588 CCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647
|| |||||||||||| | | ||||| || || || || ||| || || | ||||||
Sbjct 5586 CCTTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAG 5645
Query 53648 ATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707
| ||| || ||| |||| ||||| |||||||| || ||||||||| | ||
Sbjct 5646 GTCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTT 5705
Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGT 53766
|||||| || ||| ||| || |||||||| ||||| ||||| ||||| | | ||
Sbjct 5706 GAGAAGAACTTGGACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTGGCTGACTG- 5764
Query 53767 CTACGGTGAGGAGTT 53781
||| || ||||||||
Sbjct 5765 CTATGGCGAGGAGTT 5779
Score = 118 bits (130), Expect = 1e-21
Identities = 301/451 (67%), Gaps = 19/451 (4%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| | ||||| | || || |||||||| || ||| | ||||| |||| |||
Sbjct 6462 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGTAAC 6521
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| ||| || ||| || || |||
Sbjct 6522 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 6581
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| || ||||||||||| | | | ||| |||
Sbjct 6582 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTCTGGT--CCG 6639
Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGA 55715
| || |||| || || |||| |||||| ||| | ||||| || | |
Sbjct 6640 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATTCCCAACA 6696
Query 55716 TTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775
| || | |||||| ||||| ||| || ||||||||| | ||| | | |
Sbjct 6697 TCCCCGAAGATATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 6753
Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832
||| | ||| |||||||||||||| | ||| || ||||||||||| |||||||||
Sbjct 6754 TTGTCCAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 6813
Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892
|||| || |||| || ||| |||| | | | |||||||| || |||||| |
Sbjct 6814 ACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 6873
Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923
| |||||||| || |||||||| ||||| ||
Sbjct 6874 GTCTCAAGACCGGCATGTACTACCTGCGTAC 6904
>seq452
Length=28303
Score = 105 bits (116), Expect = 7e-18
Identities = 187/273 (68%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081
||| || |||||| | || || | ||||| ||||| |||||| || || || | ||
Sbjct 8873 CAAGCGGGTGAAGGTATAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGAGAACC 8932
Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141
||| | || |||||| | | |||| |||||||| ||||| |||| || ||||
Sbjct 8933 AAAGTTACCGCTGGGCTCCAAAACATTGATGTTGTTGGATCCCACAAAATCTTGGGCCAG 8992
Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201
| ||| || ||||||| |||||||||||||| || || ||| | | | ||
Sbjct 8993 TCCGATAATGGTTTGCTGCAGAGAGGCTTCACCGTGGTGGTAGGCAGTCAGTCCGGAGAC 9052
Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261
|| || |||| || | | ||||| |||| | || |||| |||||| ||| |||||
Sbjct 9053 ATAACCAGCCAGCTCCACAACCTTTTCGTCCTTGACCACGTTCCTCTTGAAACATGCGTA 9112
Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
| |||||| ||||| || ||||| || ||
Sbjct 9113 GAGCACCTTTCGCTGACCGGGCTTCAATCCATC 9145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547205247205600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |