Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq236 313 3e-80 seq330 194 2e-44 seq301 152 6e-32 seq23 129 7e-25 seq61 87.8 2e-12 >seq236 Length=53426 Score = 313 bits (346), Expect = 3e-80 Identities = 1143/1765 (65%), Gaps = 77/1765 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||| |||||||| || ||||||||| | |||| Sbjct 6910 GCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 6851 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || | | ||| | | |||||| | || |||| ||||||||| ||||| |||||| Sbjct 6850 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAGGGACTGGGACTGA 6791 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| |||||||| |||||||| | | |||| || | ||| ||||| Sbjct 6790 TCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAG 6731 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268 || || || | |||| | || || || |||| || | | | | || Sbjct 6730 ACGGTCTTGTAAAGTGCCTTGATA---TCTTCGGGGATGTTGGGAATGTTCTGAATGGAG 6674 Query 80269 CCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 |||| || |||| | || |||| || | ||||| ||| | | ||| Sbjct 6673 CCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGG 6614 Query 80326 TCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382 || || | ||| | | ||| || | || |||| || || ||| || ||| | Sbjct 6613 TCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGGACACGTCGCTGG 6557 Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 || | ||| | |||||| ||||| || ||||||||| || || ||||| | ||| || Sbjct 6556 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTG 6497 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC- 80501 || || ||||| ||| ||| | || || ||| ||||||| |||||| | ||| Sbjct 6496 GCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCC 6437 Query 80502 --GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554 | || | || || || | ||| | | | |||| ||||||||||| | Sbjct 6436 TTGAGCGAGTCCCACTCCCACAGGTCAG-----AGGGTTTGACATCCCACATGTCGAATT 6382 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 | | ||||||||| || || || || ||| ||| | ||||| || |||||| ||||| Sbjct 6381 GGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGG 6322 Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 | | ||| || || ||||||||| || || ||| |||||||| |||||||| Sbjct 6321 CGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCA 6262 Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734 || |||| || || || | || || || | ||| |||| || || | Sbjct 6261 GCTGACGAGCCTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGAC 6202 Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATT 80793 |||| || || | | | || || ||||||||| | || | | || ||||||| | | Sbjct 6201 CCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCG-GGCCTCCTGGACA 6143 Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853 ||||| ||| ||| |||| ||| |||||||| ||| ||| || || ||| Sbjct 6142 GGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCA 6083 Query 80854 TGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907 ||||| |||| |||||| | || ||| | ||| | || || ||| || Sbjct 6082 TGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAA 6023 Query 80908 GACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTG 80964 || |||| ||||| || || ||||| || |||| | ||| ||||| || || ||| Sbjct 6022 GAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCA-CAGTA--CTCGATAATCTCGGTG 5966 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 || | || || || || |||||||| |||||||| |||| |||||| || Sbjct 5965 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 5906 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 ||||||||| |||| | ||| |||| |||||| ||| | | ||||||| | ||| Sbjct 5905 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 5846 Query 81085 ATCTC--GCGCGCCTTGACCAC-CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 | || | |||| || | |||||| || || | | || || | || Sbjct 5845 AGCTTCTGAGCGC---GAATAGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATAC 5789 Query 81142 GCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACAT 81200 | ||||||| | || | | ||| ||| ||| | ||||| ||||| |||||||| Sbjct 5788 AAAGCCTCGAACTCCTCGCCATAGCAGT-CAGCCAGGCCAGGGCATTCGTTGGGGCACAT 5730 Query 81201 CAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260 || |||||| || ||||| ||| ||||||||| || || |||||||| || Sbjct 5729 GAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 5670 Query 81261 GGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 ||||| |||||| |||||| |||| || | || ||||| ||| | || || Sbjct 5669 AAGGAACAAGTCGCG--AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGG 5612 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTG 81372 || || | || ||| || ||||| ||||| || || | ||| | | || |||| Sbjct 5611 AACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG 5552 Query 81373 CGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432 || ||||||||| || || | |||||| ||| || || || | ||| || || Sbjct 5551 TTAC---CACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATA 5495 Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492 ||||| | || |||||| || || | || || || |||| || | ||| | Sbjct 5494 ATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGA---TGC-G 5439 Query 81493 ATTGA-----AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547 || || ||| ||||| ||||| | | ||| |||||| ||||| |||| | Sbjct 5438 ATGGACGTTCAAG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAG 5380 Query 81548 TCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCT 81607 | ||||| || |||||||||||||| | |||||||| | |||||| || |||| || Sbjct 5379 TGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT 5320 Query 81608 GAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665 |||||| | | || || |||||||| || || | || ||| |||| | | | Sbjct 5319 --GGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCT 5262 Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725 ||||| |||| || || ||| ||| || ||| ||||| || || || | || Sbjct 5261 AGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGA 5202 Query 81726 TACACGCATAAACATGTACTGGGGC 81750 || ||||||| ||||| ||||||| Sbjct 5201 CACTCGCATAATCATGTGCTGGGGC 5177 >seq330 Length=39978 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 15710 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 15651 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| | || || ||||| ||||| || |||||||| |||||| Sbjct 15650 GATACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 15591 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| |||||||||||||||| || || || | ||||| || Sbjct 15590 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 15531 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || ||||| ||||| Sbjct 15530 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGG 15484 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||| | ||||||||||| || || | |||||||| ||| Sbjct 15196 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 15137 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || | || ||||||||||||||||| ||||| || || ||| Sbjct 15136 GACACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 15077 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || |||||||| ||||| || ||||| | ||| ||| | ||| ||||| || Sbjct 15076 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGC-GACTACAA 15018 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || ||| | |||||||| ||||| Sbjct 15017 CATCCAGAAGGAGAGCACACTTCACCTTGTCCTCCGTCTTCGTGGTGG 14970 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || || ||||| || || || ||||| |||||| ||||| ||| | Sbjct 15412 GTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGAC 15353 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| ||||||||||| || || Sbjct 15352 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGACTGATC 15293 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||||||||| || ||||||| || ||||| | ||||| || |||| ||||| Sbjct 15292 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAG 15233 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || || ||| | ||||| || ||||| Sbjct 15232 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGG 15198 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||||||||| || || || ||||| || || Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||||||||| |||||||| |||||| Sbjct 14908 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 14849 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || |||||||||||||| || || || | ||| ||| | ||| ||||| || Sbjct 14848 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGC-GACTACAA 14790 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| ||| || || | ||| ||||||| || ||||| || Sbjct 14789 CATCCAGAAGGAGAGCACACTGCACTTGGTCCTGCGTCTGCGTGGTGGCCA 14739 >seq301 Length=43884 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 7734 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 7675 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 7674 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 7615 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||||||||| || ||||||| || || || | ||||| || Sbjct 7614 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTACAAC 7555 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| |||| || || ||||| Sbjct 7554 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 7508 >seq23 Length=158060 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 67574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 67515 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 67514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 67455 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 67454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 67395 Query 27595 G 27595 | Sbjct 67394 G 67394 >seq61 Length=119690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || || || |||||||| | ||||||||||| || || || |||| || || Sbjct 2758 ATACAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCC 2817 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||| ||||| |||| || |||||| Sbjct 2818 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCAG 2877 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || | ||||||||||| || || || || ||| | ||| ||||| || Sbjct 2878 CAGCGCTTGATCTACGCTGGTAAGCAGCTGGAAGACAGTCACACCTTGAGC-GACTACAA 2936 Query 27585 TGTCCAAAAG 27594 |||| ||| Sbjct 2937 CATCCAGAAG 2946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570299193400640