Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq236 313 3e-80
seq330 194 2e-44
seq301 152 6e-32
seq23 129 7e-25
seq61 87.8 2e-12
>seq236
Length=53426
Score = 313 bits (346), Expect = 3e-80
Identities = 1143/1765 (65%), Gaps = 77/1765 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||| |||||||| || ||||||||| | ||||
Sbjct 6910 GCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGC 6851
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| | | ||| | | |||||| | || |||| ||||||||| ||||| ||||||
Sbjct 6850 ATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATGTGGATGTTCAGGGACTGGGACTGA 6791
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||||| |||||||| |||||||| | | |||| || | ||| |||||
Sbjct 6790 TCAATGAAAGCACCACGATCAGCCGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAG 6731
Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCA 80268
|| || || | |||| | || || || |||| || | | | | ||
Sbjct 6730 ACGGTCTTGTAAAGTGCCTTGATA---TCTTCGGGGATGTTGGGAATGTTCTGAATGGAG 6674
Query 80269 CCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325
|||| || |||| | || |||| || | ||||| ||| | | |||
Sbjct 6673 CCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCAGTGTCGACCAGG 6614
Query 80326 TCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382
|| || | ||| | | ||| || | || |||| || || ||| || ||| |
Sbjct 6613 TCCTTGAGAAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGGACACGTCGCTGG 6557
Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442
|| | ||| | |||||| ||||| || ||||||||| || || ||||| | ||| ||
Sbjct 6556 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTG 6497
Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC- 80501
|| || ||||| ||| ||| | || || ||| ||||||| |||||| | |||
Sbjct 6496 GCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCC 6437
Query 80502 --GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCT 80554
| || | || || || | ||| | | | |||| ||||||||||| |
Sbjct 6436 TTGAGCGAGTCCCACTCCCACAGGTCAG-----AGGGTTTGACATCCCACATGTCGAATT 6382
Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614
| | ||||||||| || || || || ||| ||| | ||||| || |||||| |||||
Sbjct 6381 GGAGGATGCCCTCGGATGCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGG 6322
Query 80615 CCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674
| | ||| || || ||||||||| || || ||| |||||||| ||||||||
Sbjct 6321 CGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCA 6262
Query 80675 CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGC 80734
|| |||| || || || | || || || | ||| |||| || || |
Sbjct 6261 GCTGACGAGCCTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGAC 6202
Query 80735 CCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATT 80793
|||| || || | | | || || ||||||||| | || | | || ||||||| | |
Sbjct 6201 CCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCG-GGCCTCCTGGACA 6143
Query 80794 GGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCA 80853
||||| ||| ||| |||| ||| |||||||| ||| ||| || || |||
Sbjct 6142 GGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCA 6083
Query 80854 TGAAGTTTCTGAAAGTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGG 80907
||||| |||| |||||| | || ||| | ||| | || || ||| ||
Sbjct 6082 TGAAGCTTCTTAAAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAA 6023
Query 80908 GACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTG 80964
|| |||| ||||| || || ||||| || |||| | ||| ||||| || || |||
Sbjct 6022 GAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCA-CAGTA--CTCGATAATCTCGGTG 5966
Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024
|| | || || || || |||||||| |||||||| |||| |||||| ||
Sbjct 5965 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCA 5906
Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084
||||||||| |||| | ||| |||| |||||| ||| | | ||||||| | |||
Sbjct 5905 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 5846
Query 81085 ATCTC--GCGCGCCTTGACCAC-CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141
| || | |||| || | |||||| || || | | || || | ||
Sbjct 5845 AGCTTCTGAGCGC---GAATAGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATAC 5789
Query 81142 GCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACAT 81200
| ||||||| | || | | ||| ||| ||| | ||||| ||||| ||||||||
Sbjct 5788 AAAGCCTCGAACTCCTCGCCATAGCAGT-CAGCCAGGCCAGGGCATTCGTTGGGGCACAT 5730
Query 81201 CAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260
|| |||||| || ||||| ||| ||||||||| || || |||||||| ||
Sbjct 5729 GAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 5670
Query 81261 GGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318
||||| |||||| |||||| |||| || | || ||||| ||| | || ||
Sbjct 5669 AAGGAACAAGTCGCG--AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGG 5612
Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC------CTTG 81372
|| || | || ||| || ||||| ||||| || || | ||| | | || ||||
Sbjct 5611 AACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG 5552
Query 81373 CGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432
|| ||||||||| || || | |||||| ||| || || || | ||| || ||
Sbjct 5551 TTAC---CACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATA 5495
Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492
||||| | || |||||| || || | || || || |||| || | ||| |
Sbjct 5494 ATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGA---TGC-G 5439
Query 81493 ATTGA-----AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547
|| || ||| ||||| ||||| | | ||| |||||| ||||| |||| |
Sbjct 5438 ATGGACGTTCAAG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAG 5380
Query 81548 TCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCT 81607
| ||||| || |||||||||||||| | |||||||| | |||||| || |||| ||
Sbjct 5379 TGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT 5320
Query 81608 GAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665
|||||| | | || || |||||||| || || | || ||| |||| | | |
Sbjct 5319 --GGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCT 5262
Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725
||||| |||| || || ||| ||| || ||| ||||| || || || | ||
Sbjct 5261 AGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGA 5202
Query 81726 TACACGCATAAACATGTACTGGGGC 81750
|| ||||||| ||||| |||||||
Sbjct 5201 CACTCGCATAATCATGTGCTGGGGC 5177
>seq330
Length=39978
Score = 194 bits (214), Expect = 2e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 15710 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 15651
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| ||||| | || || ||||| ||||| || |||||||| ||||||
Sbjct 15650 GATACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 15591
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||| ||||| |||||||||||||||| || || || | ||||| ||
Sbjct 15590 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 15531
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || ||||| |||||
Sbjct 15530 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGG 15484
Score = 170 bits (188), Expect = 2e-37
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||||||| | ||||||||||| || || | |||||||| |||
Sbjct 15196 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 15137
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | || | || ||||||||||||||||| ||||| || || |||
Sbjct 15136 GACACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 15077
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || |||||||| ||||| || ||||| | ||| ||| | ||| ||||| ||
Sbjct 15076 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGC-GACTACAA 15018
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||| ||||| || ||| | |||||||| |||||
Sbjct 15017 CATCCAGAAGGAGAGCACACTTCACCTTGTCCTCCGTCTTCGTGGTGG 14970
Score = 167 bits (184), Expect = 3e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || || ||||| || || || ||||| |||||| ||||| ||| |
Sbjct 15412 GTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATCGAC 15353
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| || ||||| ||||||||||| || ||
Sbjct 15352 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGACTGATC 15293
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||||||||| || ||||||| || ||||| | ||||| || |||| |||||
Sbjct 15292 TTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAG 15233
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| || || ||| | ||||| || |||||
Sbjct 15232 TCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGG 15198
Score = 152 bits (168), Expect = 6e-32
Identities = 174/231 (75%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || ||||||||||| || || || ||||| || ||
Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || ||||||||||||||||| |||||||| ||||||
Sbjct 14908 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 14849
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || |||||||||||||| || || || | ||| ||| | ||| ||||| ||
Sbjct 14848 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGC-GACTACAA 14790
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| ||| || || | ||| ||||||| || ||||| ||
Sbjct 14789 CATCCAGAAGGAGAGCACACTGCACTTGGTCCTGCGTCTGCGTGGTGGCCA 14739
>seq301
Length=43884
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 7734 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 7675
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||| | || || |||||||||||||| ||||| || ||||||
Sbjct 7674 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 7615
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || ||||||||||| || ||||||| || || || | ||||| ||
Sbjct 7614 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTACAAC 7555
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || ||| |||| || || |||||
Sbjct 7554 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 7508
>seq23
Length=158060
Score = 129 bits (142), Expect = 7e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || |||||||| ||||| || | ||
Sbjct 67574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 67515
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| |
Sbjct 67514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 67455
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| |||||||| ||||| |||||||||| || ||||| | ||||| || |||| |||
Sbjct 67454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 67395
Query 27595 G 27595
|
Sbjct 67394 G 67394
>seq61
Length=119690
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|| || || || |||||||| | ||||||||||| || || || |||| || ||
Sbjct 2758 ATACAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCC 2817
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || ||||||||||| ||||| |||| || ||||||
Sbjct 2818 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCAG 2877
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| | || | ||||||||||| || || || || ||| | ||| ||||| ||
Sbjct 2878 CAGCGCTTGATCTACGCTGGTAAGCAGCTGGAAGACAGTCACACCTTGAGC-GACTACAA 2936
Query 27585 TGTCCAAAAG 27594
|||| |||
Sbjct 2937 CATCCAGAAG 2946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570299193400640
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