Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq363 107 2e-18 >seq363 Length=36312 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||| || || | ||||| | ||| ||||| ||||| || | || | || || | ||| Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958 |||||| |||||||||| | |||| | ||| || | || || |||||||| Sbjct 13430 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 13489 Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018 | ||||| ||||| || | |||||||||||||| ||||| | ||||| |||||||| Sbjct 13490 GAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 13549 Query 30019 CCCCGACCTCTGGTAGAGCTGACA 30042 | |||| |||||| ||||| || Sbjct 13550 GCAGGACCGCTGGTATAGCTGGCA 13573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 200/299 (67%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||| ||||| | ||||| ||||| || || || |||||| |||||| Sbjct 13650 ACGTAGAACTGGGCAAACATG---TGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGC 13706 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 |||||||| |||| | ||| || | || ||| | |||||||| | | || | | Sbjct 13707 GGGTTCCATGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATG 13766 Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238 | | |||||| || || ||| | || | |||||| ||| | ||| |||||| Sbjct 13767 ATCTCTGCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCATCCACGTACTCG 13826 Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 || || || |||| ||||||||| ||||| || || |||||||| || | || | ||| Sbjct 13827 GCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGG 13886 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357 | ||| |||| | || || | ||| || ||| ||||||||||||| || || Sbjct 13887 GTCAGGCCGACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCC 13945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406302615600624