Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq363 107 2e-18
>seq363
Length=36312
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898
||| || || | ||||| | ||| ||||| ||||| || | || | || || | |||
Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429
Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29958
|||||| |||||||||| | |||| | ||| || | || || ||||||||
Sbjct 13430 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 13489
Query 29959 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 30018
| ||||| ||||| || | |||||||||||||| ||||| | ||||| ||||||||
Sbjct 13490 GAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 13549
Query 30019 CCCCGACCTCTGGTAGAGCTGACA 30042
| |||| |||||| ||||| ||
Sbjct 13550 GCAGGACCGCTGGTATAGCTGGCA 13573
Score = 89.7 bits (98), Expect = 4e-13
Identities = 200/299 (67%), Gaps = 6/299 (2%)
Strand=Plus/Plus
Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118
||||| ||||| | ||||| ||||| || || || |||||| ||||||
Sbjct 13650 ACGTAGAACTGGGCAAACATG---TGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGC 13706
Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178
|||||||| |||| | ||| || | || ||| | |||||||| | | || | |
Sbjct 13707 GGGTTCCATGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATG 13766
Query 30179 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCT 30238
| | |||||| || || ||| | || | |||||| ||| | ||| ||||||
Sbjct 13767 ATCTCTGCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCATCCACGTACTCG 13826
Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298
|| || || |||| ||||||||| ||||| || || |||||||| || | || | |||
Sbjct 13827 GCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGG 13886
Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357
| ||| |||| | || || | ||| || ||| ||||||||||||| || ||
Sbjct 13887 GTCAGGCCGACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCC 13945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406302615600624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |