Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq330 93.3 3e-14
seq301 89.7 3e-13
>seq330
Length=39978
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTC 34546
||||||| ||||| || || ||||||||||| || ||||| || | || || ||| |
Sbjct 14751 AGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG--C 14808
Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606
| ||||||| || || ||||| ||||| || || ||||| ||||| || || | ||||
Sbjct 14809 GACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCT 14868
Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665
||||||| ||| || | || ||| | || ||||| ||||| || | |
Sbjct 14869 CCTTGTC-CTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGG 14927
Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || ||||| | || || || |||||||||||
Sbjct 14928 GTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537
|| || | |||||| | || | || || ||||||||||| || ||||| || | ||
Sbjct 14970 CCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 15029
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| ||| || |||| ||||| || || || ||||| || | |||||| || ||||| |
Sbjct 15030 AAGGTG--CGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGG 15087
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| ||| |||| ||| || | || |||||| ||
Sbjct 15088 GAATACCCTCCTTGTC-CTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCA 15146
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||| || || || || ||||| ||||| || || || ||||||||
Sbjct 15147 ACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196
>seq301
Length=43884
Score = 89.7 bits (98), Expect = 3e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||| ||||| || |||||| || ||||| || || || || |||||
Sbjct 7517 AGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGG 7576
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| || || || || ||||| |||||||| || | ||||||
Sbjct 7577 CCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 7636
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||||| | || || | || ||||| |||||| || | |||
Sbjct 7637 TTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 7695
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||||| || || || | || || || ||||||||||| |||
Sbjct 7696 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 7738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314723570174276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |