Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq363 96.9 3e-15
>seq363
Length=36312
Score = 96.9 bits (106), Expect = 3e-15
Identities = 214/309 (69%), Gaps = 18/309 (6%)
Strand=Plus/Plus
Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783
|| ||||||||| ||| | ||||||| || || || ||||| || ||
Sbjct 13646 CGAGACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCG 13705
Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCT---GTCATCAGGGTTCCGCTTCAAGG--TG 6838
||||||||| |||| | | |||| |||| ||| | |||||| | | | | | ||
Sbjct 13706 CGGGTTCCATGCGC---TGAGGATCATTCTCCGGTCGTAAGGGTT--GTTGCGAAGCTTG 13760
Query 6839 TCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCC 6896
| ||| | | |||| |||||||| | |||| || | |||||||| || || || |
Sbjct 13761 TGGATGATCT-CTGCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCATCCAC 13819
Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCT 6956
| ||||| || |||||||| | ||||||||| |||||||| ||||||| ||| || |||
Sbjct 13820 G-TACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCACCGACCT 13878
Query 6957 CCCGAGATGGGAACCCC--CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014
| || | || | || |||| ||| || || || || ||||| | ||||||||||
Sbjct 13879 CGCG-GTGGGTCAGGCCGACGCT-GTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGAT 13936
Query 7015 CTTCACCCC 7023
||| || ||
Sbjct 13937 CTTGACGCC 13945
Score = 96.9 bits (106), Expect = 3e-15
Identities = 214/309 (69%), Gaps = 18/309 (6%)
Strand=Plus/Minus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG--GGGGTTCC 34379
|| || ||||||||||||| | ||||| || || || || ||| |||| || | |
Sbjct 13945 GGCGTCAAGATCTGGGACGGCAATGGGTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGAC 13887
Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439
| | || |||| || ||| ||||||| |||||||| ||||||||| | |||||||| |
Sbjct 13886 CCAC-CGCGAGGTCGGTGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCG 13828
Query 34440 CGGAGTATCGGGGGAGCGAA-GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497
| ||||| || || || || |||||||| | || |||| | |||||||| |||| |
Sbjct 13827 CCGAGTA-CGTGGATGCAAAGGCGGACTACGCCGGCAAGGGCGTCGACCAGCTGGCAG-A 13770
Query 34498 CGTGATCGACA--CCTTGAAGCGGAACCCTGATGAC---AGAAGGATCGTGATGTGCGCG 34552
| ||| ||| | | | | | |||||| | ||| |||| |||| | | ||||
Sbjct 13769 GATCATCCACAAGCTTCGCAAC--AACCCTTACGACCGGAGAATGATCCTCA---GCGCA 13715
Query 34553 TGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC 34612
||||||||| || || ||||| || || || ||||||| | ||| |||
Sbjct 13714 TGGAACCCGCGAGACTTCAAGAGCATGGCCCTGCCGCCCTGCCACATGTTTGCCCAGTTC 13655
Query 34613 TACGTCGCG 34621
|||||| ||
Sbjct 13654 TACGTCTCG 13646
Score = 93.3 bits (102), Expect = 4e-14
Identities = 195/286 (68%), Gaps = 15/286 (5%)
Strand=Plus/Plus
Query 6433 GTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACG------GC 6486
||| |||| | ||||||||||||| | | || ||||||| | || || |
Sbjct 13295 GTAACCTTTGACCACGAAGTCCTCGACCTTCCAGCCATCGAT---GCTGCCGCCCTTCTC 13351
Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546
|| |||| | |||| ||||||||| || ||||| || | |||||| || |||
Sbjct 13352 CCGCGTAATCTCCAGCTCGGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGC 13411
Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGA 6604
|||||||||| | ||||| || || || |||| ||| || || || ||
Sbjct 13412 GTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATGACG--TGGGTGAGGCTTCCGGGC 13469
Query 6605 ACCA-ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663
|||| | | ||| || ||||||| ||||| |||||||| || || || || ||||||||
Sbjct 13470 ACCAGATCGCAC-ACGTGAGCGAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAA 13528
Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
|| | || | |||||||| | || || || || |||||||||
Sbjct 13529 GGGGATGCCGAGGCCCATGTCGCAGGACCGCTGGTATAGCTGGCAG 13574
Score = 93.3 bits (102), Expect = 4e-14
Identities = 195/286 (68%), Gaps = 15/286 (5%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||||||||| || || || || | |||||||| | || | || |||||||| || ||
Sbjct 13574 CTGCCAGCTATACCAGCGGTCCTGCGACATGGGCCTCGGCATCCCCTTCAACATCGCCAG 13515
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754
|| || |||||||| ||||| ||||||| || ||| | | |||| || || ||
Sbjct 13514 CTATGCGCTGCTCACACACATGCTCGCTCACGT-GTGCGATCTGGTGCCCGGAAGCCTCA 13456
Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
|| ||| |||| || || || ||||| | |||||||||| ||| || ||
Sbjct 13455 CCCA--CGTCATGGGAGACGCACACGTCTACATCGACCACATCGACGCTCTCAAGACGCA 13398
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGC------CGTCAC 34866
|||| | || ||||| || ||||||||| |||| | |||| || | || ||
Sbjct 13397 GCTGGAGCGTGAGCCTCGGCCGTTCCCCGAGCTGGAGATTACGCGGGAGAAGGGCGGCAG 13338
Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912
| ||||||| || | | ||||||||||||| | |||| |||
Sbjct 13337 C---ATCGATGGCTGGAAGGTCGAGGACTTCGTGGTCAAAGGTTAC 13295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448253591643840
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