Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq363 96.9 3e-15 >seq363 Length=36312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 214/309 (69%), Gaps = 18/309 (6%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| | ||||||| || || || ||||| || || Sbjct 13646 CGAGACGTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCG 13705 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCT---GTCATCAGGGTTCCGCTTCAAGG--TG 6838 ||||||||| |||| | | |||| |||| ||| | |||||| | | | | | || Sbjct 13706 CGGGTTCCATGCGC---TGAGGATCATTCTCCGGTCGTAAGGGTT--GTTGCGAAGCTTG 13760 Query 6839 TCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCC 6896 | ||| | | |||| |||||||| | |||| || | |||||||| || || || | Sbjct 13761 TGGATGATCT-CTGCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCATCCAC 13819 Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCT 6956 | ||||| || |||||||| | ||||||||| |||||||| ||||||| ||| || ||| Sbjct 13820 G-TACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCACCGACCT 13878 Query 6957 CCCGAGATGGGAACCCC--CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 | || | || | || |||| ||| || || || || ||||| | |||||||||| Sbjct 13879 CGCG-GTGGGTCAGGCCGACGCT-GTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGAT 13936 Query 7015 CTTCACCCC 7023 ||| || || Sbjct 13937 CTTGACGCC 13945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 214/309 (69%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG--GGGGTTCC 34379 || || ||||||||||||| | ||||| || || || || ||| |||| || | | Sbjct 13945 GGCGTCAAGATCTGGGACGGCAATGGGTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGAC 13887 Query 34380 CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGG 34439 | | || |||| || ||| ||||||| |||||||| ||||||||| | |||||||| | Sbjct 13886 CCAC-CGCGAGGTCGGTGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCG 13828 Query 34440 CGGAGTATCGGGGGAGCGAA-GCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTA 34497 | ||||| || || || || |||||||| | || |||| | |||||||| |||| | Sbjct 13827 CCGAGTA-CGTGGATGCAAAGGCGGACTACGCCGGCAAGGGCGTCGACCAGCTGGCAG-A 13770 Query 34498 CGTGATCGACA--CCTTGAAGCGGAACCCTGATGAC---AGAAGGATCGTGATGTGCGCG 34552 | ||| ||| | | | | | |||||| | ||| |||| |||| | | |||| Sbjct 13769 GATCATCCACAAGCTTCGCAAC--AACCCTTACGACCGGAGAATGATCCTCA---GCGCA 13715 Query 34553 TGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTC 34612 ||||||||| || || ||||| || || || ||||||| | ||| ||| Sbjct 13714 TGGAACCCGCGAGACTTCAAGAGCATGGCCCTGCCGCCCTGCCACATGTTTGCCCAGTTC 13655 Query 34613 TACGTCGCG 34621 |||||| || Sbjct 13654 TACGTCTCG 13646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/286 (68%), Gaps = 15/286 (5%) Strand=Plus/Plus Query 6433 GTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACG------GC 6486 ||| |||| | ||||||||||||| | | || ||||||| | || || | Sbjct 13295 GTAACCTTTGACCACGAAGTCCTCGACCTTCCAGCCATCGAT---GCTGCCGCCCTTCTC 13351 Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 || |||| | |||| ||||||||| || ||||| || | |||||| || ||| Sbjct 13352 CCGCGTAATCTCCAGCTCGGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGC 13411 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGA 6604 |||||||||| | ||||| || || || |||| ||| || || || || Sbjct 13412 GTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATGACG--TGGGTGAGGCTTCCGGGC 13469 Query 6605 ACCA-ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 |||| | | ||| || ||||||| ||||| |||||||| || || || || |||||||| Sbjct 13470 ACCAGATCGCAC-ACGTGAGCGAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAA 13528 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 || | || | |||||||| | || || || || ||||||||| Sbjct 13529 GGGGATGCCGAGGCCCATGTCGCAGGACCGCTGGTATAGCTGGCAG 13574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/286 (68%), Gaps = 15/286 (5%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | |||||||| | || | || |||||||| || || Sbjct 13574 CTGCCAGCTATACCAGCGGTCCTGCGACATGGGCCTCGGCATCCCCTTCAACATCGCCAG 13515 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 || || |||||||| ||||| ||||||| || ||| | | |||| || || || Sbjct 13514 CTATGCGCTGCTCACACACATGCTCGCTCACGT-GTGCGATCTGGTGCCCGGAAGCCTCA 13456 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || ||| |||| || || || ||||| | |||||||||| ||| || || Sbjct 13455 CCCA--CGTCATGGGAGACGCACACGTCTACATCGACCACATCGACGCTCTCAAGACGCA 13398 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGC------CGTCAC 34866 |||| | || ||||| || ||||||||| |||| | |||| || | || || Sbjct 13397 GCTGGAGCGTGAGCCTCGGCCGTTCCCCGAGCTGGAGATTACGCGGGAGAAGGGCGGCAG 13338 Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912 | ||||||| || | | ||||||||||||| | |||| ||| Sbjct 13337 C---ATCGATGGCTGGAAGGTCGAGGACTTCGTGGTCAAAGGTTAC 13295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448253591643840