Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq330 89.7 4e-13 >seq330 Length=39978 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTG 39140 || || |||||||| || || || || || ||| |||| || || |||| |||||||| Sbjct 14994 TGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAG-GTGCGACCGTCCTCAAGCTG 15052 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| ||||| |||||||||||||| || | ||| | | ||| |||||| ||| | | Sbjct 15053 CTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCT 15111 Query 39201 CTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || ||||| | | | || || || || || |||| ||||| | || || | Sbjct 15112 TTGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGG 15171 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||| || || ||||| ||||| Sbjct 15172 TCAACGTCTTGACGAAGATCTGCAT 15196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537370443236