Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq330 98.7 7e-16
seq301 89.7 3e-13
>seq330
Length=39978
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || || || || || ||||| ||||| || || || |
Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| ||||| || || | || || || ||
Sbjct 14908 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 14849
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| || || ||||| || || || |||||||||| ||||| || |||| ||||||
Sbjct 14848 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 14789
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819
|| || || ||| |||| | || || ||
Sbjct 14788 ATCCAGAAGGAGAGCACACTGCACTTGGT 14760
>seq301
Length=43884
Score = 89.7 bits (98), Expect = 3e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||||||||| || |||||||| || || || || ||
Sbjct 7737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 7678
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || ||||| || || | || || ||
Sbjct 7677 TCCGACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 7619
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||||| || || || || || || || ||||| || | || ||| | ||| ||
Sbjct 7618 CCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTA 7559
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||| ||
Sbjct 7558 CAACATCCAGAAGGAGTCTAC 7538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338003124158576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |