Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq246 147 2e-30
>seq246
Length=51316
Score = 147 bits (162), Expect = 2e-30
Identities = 550/855 (64%), Gaps = 17/855 (2%)
Strand=Plus/Plus
Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307
|||||| || ||||| |||| || ||||| |||||||| || || ||||| | |
Sbjct 22942 ACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGA 23001
Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTT--TA 4365
||||| || ||||| || ||||| || || | | ||||| | | ||| | | ||
Sbjct 23002 GAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTA--GATCTTCTCGTTGCCTA 23059
Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425
|||| ||||||| || || || ||||| || || ||||| |||| || | | |||| |
Sbjct 23060 GAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 23119
Query 4426 TTCCAATTAATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484
| |||| | | |||| || || | ||||| ||||| || || || || ||
Sbjct 23120 TGCCAAGCAGGG-CGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCA 23178
Query 4485 TCTGTGATTATATCTTTTATTTTATCTTT---AGATGGTTTATTTAC-TAAGTATCCAAA 4540
|| ||||| || || || || || || | || || | | || | ||
Sbjct 23179 TCAGTGATGATGTCACGGATCACCTCCTTGCTAGCACGGTTCTTGAGGTGAGAGTGCAGC 23238
Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600
| || ||||| ||| |||| ||| ||||| | || || ||||| |||||
Sbjct 23239 ----AGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAA 23294
Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660
|| | || ||||| | ||||| ||| || ||||| || || | |||||| | ||
Sbjct 23295 GGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 23354
Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720
||||| || || || ||||| ||||| || || | || | || || | ||
Sbjct 23355 GAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTT 23414
Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780
||| | ||||| || | ||||||| || || || || ||| ||||| || | ||
Sbjct 23415 GTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAAT 23474
Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840
||||| || | | || | || | || || ||||| || || |||
Sbjct 23475 GGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGA 23534
Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900
|| | || || || || || || || ||||| || ||||| ||||||| ||| ||
Sbjct 23535 GTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTC 23594
Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960
| | || || ||| | || | || || | ||| ||||| || || || |||
Sbjct 23595 GGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGA 23654
Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TT 5017
||| ||||| || |||| | ||||| || ||||||| |||||| || || ||
Sbjct 23655 GGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTT 23714
Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077
||||| | | ||| ||| || | | ||||| ||||| | ||||| || || |||||
Sbjct 23715 ATTCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTC 23774
Query 5078 CGCTTTTTTGTACAT 5092
|| |||||||||||
Sbjct 23775 GGCCTTTTTGTACAT 23789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427041418263476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |