Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq246 147 2e-30 >seq246 Length=51316 Score = 147 bits (162), Expect = 2e-30 Identities = 550/855 (64%), Gaps = 17/855 (2%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| || ||||| |||| || ||||| |||||||| || || ||||| | | Sbjct 22942 ACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGA 23001 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTT--TA 4365 ||||| || ||||| || ||||| || || | | ||||| | | ||| | | || Sbjct 23002 GAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTA--GATCTTCTCGTTGCCTA 23059 Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAA 4425 |||| ||||||| || || || ||||| || || ||||| |||| || | | |||| | Sbjct 23060 GAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCA 23119 Query 4426 TTCCAATTAATCTCACAGGT-AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 | |||| | | |||| || || | ||||| ||||| || || || || || Sbjct 23120 TGCCAAGCAGGG-CGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCA 23178 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTT---AGATGGTTTATTTAC-TAAGTATCCAAA 4540 || ||||| || || || || || || | || || | | || | || Sbjct 23179 TCAGTGATGATGTCACGGATCACCTCCTTGCTAGCACGGTTCTTGAGGTGAGAGTGCAGC 23238 Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 | || ||||| ||| |||| ||| ||||| | || || ||||| ||||| Sbjct 23239 ----AGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAA 23294 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 || | || ||||| | ||||| ||| || ||||| || || | |||||| | || Sbjct 23295 GGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 23354 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTT 4720 ||||| || || || ||||| ||||| || || | || | || || | || Sbjct 23355 GAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTT 23414 Query 4721 GTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 ||| | ||||| || | ||||||| || || || || ||| ||||| || | || Sbjct 23415 GTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAAT 23474 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||||| || | | || | || | || || ||||| || || ||| Sbjct 23475 GGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGA 23534 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 || | || || || || || || || ||||| || ||||| ||||||| ||| || Sbjct 23535 GTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTC 23594 Query 4901 TGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | | || || ||| | || | || || | ||| ||||| || || || ||| Sbjct 23595 GGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGA 23654 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TT 5017 ||| ||||| || |||| | ||||| || ||||||| |||||| || || || Sbjct 23655 GGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTT 23714 Query 5018 TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC 5077 ||||| | | ||| ||| || | | ||||| ||||| | ||||| || || ||||| Sbjct 23715 ATTCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTC 23774 Query 5078 CGCTTTTTTGTACAT 5092 || ||||||||||| Sbjct 23775 GGCCTTTTTGTACAT 23789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041418263476