Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq363 111 1e-19 seq322 82.4 6e-11 >seq363 Length=36312 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||| || || | ||||| | ||| ||||| ||||| || | || | ||| || | ||| Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224 |||||| |||||||||| | |||| | ||| || | || || |||||||| Sbjct 13430 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 13489 Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284 | ||||| ||||| || | |||||||||||||| ||||| | ||||| |||||||| Sbjct 13490 GAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 13549 Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308 | |||| |||||| ||||| || Sbjct 13550 GCAGGACCGCTGGTATAGCTGGCA 13573 >seq322 Length=40969 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/146 (75%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603 |||| || |||||||| || || | |||||| |||||||| || ||| | | || Sbjct 31088 AGATTGGAGACAAGTTCGCCTCTCGTCACGGT-CAAAAGGGCACTATTGGTGTCA--CTT 31144 Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCATCAAC 48660 ||| || ||||||||||||||| ||||| || || || || ||| ||||||||||| Sbjct 31145 ACCGACAAGAGGACATGCCCTTC-ACAAGAGAAGGTGTCACTCCAGACATCATCATCAAC 31203 Query 48661 CCCCACGCCTTTCCCTCCAGGATGAC 48686 || |||||| |||| ||| | ||||| Sbjct 31204 CCTCACGCCATTCCGTCCCGTATGAC 31229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369500120703932