Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq363 111 1e-19
seq322 82.4 6e-11
>seq363
Length=36312
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164
||| || || | ||||| | ||| ||||| ||||| || | || | ||| || | |||
Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429
Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 27224
|||||| |||||||||| | |||| | ||| || | || || ||||||||
Sbjct 13430 GACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCACCAGATCGCACACGTGAGC 13489
Query 27225 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 27284
| ||||| ||||| || | |||||||||||||| ||||| | ||||| ||||||||
Sbjct 13490 GAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATGTC 13549
Query 27285 CCCCGACCTCTGGTAGAGCTGACA 27308
| |||| |||||| ||||| ||
Sbjct 13550 GCAGGACCGCTGGTATAGCTGGCA 13573
>seq322
Length=40969
Score = 82.4 bits (90), Expect = 6e-11
Identities = 110/146 (75%), Gaps = 8/146 (5%)
Strand=Plus/Plus
Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603
|||| || |||||||| || || | |||||| |||||||| || ||| | | ||
Sbjct 31088 AGATTGGAGACAAGTTCGCCTCTCGTCACGGT-CAAAAGGGCACTATTGGTGTCA--CTT 31144
Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAG-GACGGGGTGGTGCCCGACCTCATCATCAAC 48660
||| || ||||||||||||||| ||||| || || || || ||| |||||||||||
Sbjct 31145 ACCGACAAGAGGACATGCCCTTC-ACAAGAGAAGGTGTCACTCCAGACATCATCATCAAC 31203
Query 48661 CCCCACGCCTTTCCCTCCAGGATGAC 48686
|| |||||| |||| ||| | |||||
Sbjct 31204 CCTCACGCCATTCCGTCCCGTATGAC 31229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369500120703932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |