Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq236 154 2e-32 >seq236 Length=53426 Score = 154 bits (170), Expect = 2e-32 Identities = 287/419 (68%), Gaps = 2/419 (0%) Strand=Plus/Minus Query 77946 TCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTC-ACCATCTTCCTTAAC 78004 ||| ||| ||||||||||| || |||||||| | | |||||| | ||||| | ||| Sbjct 5761 TCAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAAC 5703 Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064 || ||||| |||||||| || ||||| ||||||| || | || || | | || Sbjct 5702 ACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTC 5643 Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 ||| || || ||||| ||||| || ||||| | | || | ||||| || || Sbjct 5642 TTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTC 5583 Query 78125 TAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGT 78184 || || || || | | ||||| || || ||||| ||||| || | ||||||||| || Sbjct 5582 GAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGT 5523 Query 78185 GTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAAT 78244 ||| || | |||| | ||| ||||||||||||||||| || || || || |||| ||| Sbjct 5522 GTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAAT 5463 Query 78245 ATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGA 78304 ||| || | || || || | | | | || || || || |||||||| || Sbjct 5462 GTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGA 5403 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363 || | || || |||| || || ||||||||||| || || || ||| |||||| Sbjct 5402 AATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGT 5344 Score = 86.0 bits (94), Expect = 9e-12 Identities = 177/263 (67%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || |||| || |||| | ||||| || |||||||| || || || ||| Sbjct 6934 GTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGA 6875 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| || ||| |||||||| || | ||| | ||||| || Sbjct 6874 CCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATG 6815 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || |||| ||||| ||||| |||||||| || | |||||||||||| | | | Sbjct 6814 TGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGACA 6755 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 || |||| ||| ||||| | || ||| ||| | |||||||| || || | | Sbjct 6754 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATG 6695 Query 77022 TTTG---TATTTTGAATGGAACC 77041 || | | || |||||||| || Sbjct 6694 TTGGGAATGTTCTGAATGGAGCC 6672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655149758080