Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq236 154 2e-32
>seq236
Length=53426
Score = 154 bits (170), Expect = 2e-32
Identities = 287/419 (68%), Gaps = 2/419 (0%)
Strand=Plus/Minus
Query 77946 TCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTC-ACCATCTTCCTTAAC 78004
||| ||| ||||||||||| || |||||||| | | |||||| | ||||| | |||
Sbjct 5761 TCAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC-TCAAC 5703
Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064
|| ||||| |||||||| || ||||| ||||||| || | || || | | ||
Sbjct 5702 ACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTC 5643
Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124
||| || || ||||| ||||| || ||||| | | || | ||||| || ||
Sbjct 5642 TTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTC 5583
Query 78125 TAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGT 78184
|| || || || | | ||||| || || ||||| ||||| || | ||||||||| ||
Sbjct 5582 GAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGT 5523
Query 78185 GTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAAT 78244
||| || | |||| | ||| ||||||||||||||||| || || || || |||| |||
Sbjct 5522 GTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAAT 5463
Query 78245 ATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGA 78304
||| || | || || || | | | | || || || || |||||||| ||
Sbjct 5462 GTAAGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGA 5403
Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGT 78363
|| | || || |||| || || ||||||||||| || || || ||| ||||||
Sbjct 5402 AATCATGGCACATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGT 5344
Score = 86.0 bits (94), Expect = 9e-12
Identities = 177/263 (67%), Gaps = 3/263 (1%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| ||||| || |||| || |||| | ||||| || |||||||| || || || |||
Sbjct 6934 GTGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGA 6875
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|| || |||| || ||| |||||||| || | ||| | ||||| ||
Sbjct 6874 CCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCATTGTGGGATCCTTCATG 6815
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
|| || |||| ||||| ||||| |||||||| || | |||||||||||| | | |
Sbjct 6814 TGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGACA 6755
Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021
|| |||| ||| ||||| | || ||| ||| | |||||||| || || | |
Sbjct 6754 ATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGATG 6695
Query 77022 TTTG---TATTTTGAATGGAACC 77041
|| | | || |||||||| ||
Sbjct 6694 TTGGGAATGTTCTGAATGGAGCC 6672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694655149758080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |